Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0537 ATGGCGTATCACAACCACAACCTCACGCAACCAGACGTCCCACTCCACCATTTCCCGAACCAATCCATATTACCGGACCAACAACAACTCCCCTCCTCACCCGACCCTACCTCCAAACCTCCCACCAATCCACACCCTCTCCAAACCGCGCCCAGTTGGCTCAACGACGCCCTCCTCCGCACTCACTACACCGacaccaccaccaacaccacAGTCACTAATGGCAACGTTAACGCCAACAACAACGTTAACGGTTCCAATTTCCTGAACCTGAACCCGGGCTCCGACGCGCGGTGGCTGGCCCGGCCCGTCCTCCACCGTCACCCCGGCGAAGTCATCGACTCCGCCGCCGCCGGCGAGTCCCTCGGGGAGCCCGCCGATTTGAAGGGCGGCGGCGACGCCGTGAACTGGCAGATTGGGCGGTGGAAGGCGGAGATTCTGGCGCACCCGCTGTACGAACAGCTGCTGTCGGCGCACGTGGCGTGTCTCCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGACGCGCAGTTGGCGCAGTCGCAGAATGTGGTCGCCAAGTACTCCGCCTTCGGACACAACAACATCGTCGCGGATGACAAGGAACTCGACCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAATTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTGCAGAGTCTAACAGGAGTTTCACCTGGGGAAGGTACAGGGGCAACAAtgtctgatgatgaagatgaccAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTGGATGGGGCAGATAGCATGGGATTTGGCCCTCTTGTTCCTACAGAGAGTGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAACTGAAACAGgGTTATAAGGAGAAAATTGTAGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTCTGCTTAAAGCTTGGTGGCAATCTCATTCCAAGTGGCCTTACCCTACGGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACTGGGTTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTATTCCTATCAAAACTAG 1227 0.5167 MAYHNHNLTQPDVPLHHFPNQSILPDQQQLPSSPDPTSKPPTNPHPLQTAPSWLNDALLRTHYTDTTTNTTVTNGNVNANNNVNGSNFLNLNPGSDARWLARPVLHRHPGEVIDSAAAGESLGEPADLKGGGDAVNWQIGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHNNIVADDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDSSLDGADSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRYSYQN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0537 408 Pfam KNOX2 domain 199 248 IPR005541 GO:0003677|GO:0005634
Ssu5g0537 408 SMART HOX_1 328 393 IPR001356 GO:0003677
Ssu5g0537 408 CDD homeodomain 329 390 IPR001356 GO:0003677
Ssu5g0537 408 Pfam Homeobox KN domain 346 385 IPR008422 GO:0003677|GO:0006355
Ssu5g0537 408 Gene3D - 325 398 - -
Ssu5g0537 408 Pfam ELK domain 306 327 IPR005539 GO:0003677
Ssu5g0537 408 MobiDBLite consensus disorder prediction 1 50 - -
Ssu5g0537 408 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 405 - -
Ssu5g0537 408 SUPERFAMILY Homeodomain-like 328 392 IPR009057 -
Ssu5g0537 408 SMART KNOX2_2 194 249 IPR005541 GO:0003677|GO:0005634
Ssu5g0537 408 MobiDBLite consensus disorder prediction 389 408 - -
Ssu5g0537 408 ProSiteProfiles 'Homeobox' domain profile. 326 389 IPR001356 GO:0003677
Ssu5g0537 408 ProSiteProfiles ELK domain profile. 306 326 IPR005539 GO:0003677
Ssu5g0537 408 SMART KNOX1_2 140 184 IPR005540 GO:0003677|GO:0005634
Ssu5g0537 408 Pfam KNOX1 domain 143 183 IPR005540 GO:0003677|GO:0005634
Ssu5g0537 408 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 38 405 - -
Ssu5g0537 408 SMART ELK_2 306 327 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0537 Ssu-Chr5 11825970 11829968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0537 1 403 Homeobox Transcription Factor Family AT5G25220 63.170 3.69e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu5g0537 KNOX2 3.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0537 - - gmx:100784317 668.307