Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0534 ATGAAAACGAAGCTTCTTCTTATGCTTCTCATGCTCCTCCTTATTCTCCACGAACCCATTTGGATTCTTGCCTCACCAAACCCTCTTGCTCCCTCACCTCAAGTTCCACCCTTTTCTCCATTTTCCTCTTCAATGTCTGCTTCCTCTCcagGAATTGTGATGGGGGCTGAACAGCAACAAGTGGATTCACACAAGAAAATGGTAATTGCTATTGCCGTAGCCAGCACTTCATTTGGTGCAGTCATTTTGTGTGTGTTGTGCATCTGGATTTACTACACCAAGTACCCTTTAAAATCCAACAAGAAAAACGTTCAAAGATCAGATGCTGAAAAAGGGCTAGCTTCAGCACCATTTTTGAGTAAATTCAGCTCTATAAAGCTGGTTGGTAAGAAGGGGTGTGTTCCAATAATAGATTATAAGCAAATAGAAAAAGCCACCGGCAATTTCAAGGAAATTAACATCTTGGGTGAGGGTGGTTTTGGATGCGTTTACAAGGCTCATTTGGATGATAATTTGGATGTTGCCGTTAAGAAATTGCACTGTGAAAATCAGTATGCTGAGCAAGAATTTGAGAATGAGGTGGATTTGTTAAGTAAAATTCAACATCCAAATGTAATTTCTCTACTGGGTTGTAGCAGTAACGACGATACAAGGATTATTGTCTATGAATTGATGCATAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCAGCATTGACCTGGCATTTGAGGATGAAGATTGCTCTTGACACAGCAAGGGGATTAAAATATCTGCATGAGCACTGTTATCCTCCGGTGATCCACAGAGATCTGAAATCTTCTAATATTCTTTTAGATTCAAAGTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACCAATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACATTGGGTTACGTAGCCCCGGAGTATCTTTTAGATGgTAAATTGACTGATAAAAGCGATGTCTATGCTTTTGGAGTTGTGCTTCTGGAGCTTCTATTGGGAAAGAAGGCTGTGGAAAAACTAGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCTAAGCTTCCAAACATCGTGGATCCTGTAATTAAGAATACAATGGACCCCAAGCACTTATACCAGGTTGCTGCTGTGGCCGTGCTATGCGTGCAACCAGAGCCAAGTTACCGTCCACTGATTGCAGATGTTCTCCACTCACTCATCCCTCTCGTGCCAGTTGAGCTTGGAGGAACACTCAGGGTTCCACAACTGCCGCAGCAAGTCTTACCCTCTGACCCACCTGTGGATCCTAGTCAATGA 1356 0.4255 MKTKLLLMLLMLLLILHEPIWILASPNPLAPSPQVPPFSPFSSSMSASSPGIVMGAEQQQVDSHKKMVIAIAVASTSFGAVILCVLCIWIYYTKYPLKSNKKNVQRSDAEKGLASAPFLSKFSSIKLVGKKGCVPIIDYKQIEKATGNFKEINILGEGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQEFENEVDLLSKIQHPNVISLLGCSSNDDTRIIVYELMHNGSLETQLHGPSHGSALTWHLRMKIALDTARGLKYLHEHCYPPVIHRDLKSSNILLDSKFNAKLSDFGLAITNGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKKAVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDPKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLRVPQLPQQVLPSDPPVDPSQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0534 451 ProSitePatterns Protein kinases ATP-binding region signature. 155 178 IPR017441 GO:0005524
Ssu5g0534 451 Pfam Protein kinase domain 149 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0534 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Ssu5g0534 451 ProSiteProfiles Protein kinase domain profile. 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0534 451 PANTHER OS01G0750732 PROTEIN 37 436 - -
Ssu5g0534 451 SMART serkin_6 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0534 451 Gene3D Phosphorylase Kinase; domain 1 116 224 - -
Ssu5g0534 451 CDD STKc_IRAK 155 422 - -
Ssu5g0534 451 SUPERFAMILY Protein kinase-like (PK-like) 131 419 IPR011009 -
Ssu5g0534 451 Gene3D Transferase(Phosphotransferase) domain 1 225 424 - -
Ssu5g0534 451 PANTHER BNAA04G14780D PROTEIN 37 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0534 Ssu-Chr5 11714938 11719390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0534 30 365 Receptor kinase-like Gene Family AT1G80640 50.291 6.03e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Ssu5g0534 Pkinase 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0534 - - gmx:100785380 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0534 5 11714938 11719390 Ssu1g3503 1 89543766 89546237 PCT