Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0530 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCAATGTGTCTCACTCATCATCATCTTCTAGCTCAAAGCTTCTCTCAGCAACTTTGA 255 0.4902 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPMCLTHHHLLAQSFSQQL 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0530 84 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Ssu5g0530 84 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 68 - -
Ssu5g0530 84 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Ssu5g0530 84 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 68 - -
Ssu5g0530 84 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Ssu5g0530 84 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Ssu5g0530 84 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Ssu5g0530 84 PIRSF PTI6 1 81 IPR017392 GO:0003700
Ssu5g0530 84 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Ssu5g0530 84 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Ssu5g0530 84 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0530 Ssu-Chr5 11638314 11638908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0530 1 84 AP2-EREBP Transcription Factor Family AT5G25190 76.744 1.33e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g0530 AP2 9.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0530 - - gmx:100785918 133.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0530 5 11638314 11638908 Ssu1g3505 1 89567265 89568057 PCT