Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0529 ATGGCTTCTTTGCAAATGACTAGGCAGGCTTTGGCATCAGAGCCTCAGAGAGCCCCTTCGGTGCCGAATGCCACCTCCACAACCACACCAAGCAACTTCAGTGGAAAGAGTGACCAAACTCGTGTAGTGTTGCCACACAAGAGACCAGAGGAGGAGCAAGAGTCAGAGGCCAACAGGGGTGTTAAAAGGGTTAAAGCTGTGGAAAATGTTCCTCTACAATTCAAGCCTCTTGAGGAAGACCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGGTCTATTGAGCTCTGCTCTGTCATTCCACCCCAGGCCTTTTAA 321 0.4891 MASLQMTRQALASEPQRAPSVPNATSTTTPSNFSGKSDQTRVVLPHKRPEEEQESEANRGVKRVKAVENVPLQFKPLEEDHIEQMIEELLDYGSIELCSVIPPQAF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0529 106 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 100 - -
Ssu5g0529 106 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 100 - -
Ssu5g0529 106 MobiDBLite consensus disorder prediction 1 60 - -
Ssu5g0529 106 MobiDBLite consensus disorder prediction 41 60 - -
Ssu5g0529 106 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0529 Ssu-Chr5 11637970 11638290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0529 54 106 AP2-EREBP Transcription Factor Family AT5G25190 57.627 8.09e-17 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0529 - - gmx:100807612 177.563