Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g0525 | ATGGAAGGACTAAGCAAGAAGGAGCCACACTTTTGTGACAGACGAAGCGTCTTCTCTTCTGCACCAGAGGCTCCCCCAAGTCCAAATACCCCACTGCAGCATCCCCATGAAAAGAAACAGCTATCAgttgaggaagaagaggaagaaaaggagCCAAAGCCTATTGCCCTATTGGATTTGAATGTCTCAGGTGATGATTCCTGCAATCCAGAAGGACCAGAACTCAACCTCATCACTTGTTTGGATGTGGGGTCATCATCCAATGCCAATTCATCAGAAACCCCTCTTGGTTCTGATGCAGAGCCAAGAGTGTTCTCTTGCAACTACTGCCACAGGAAGTTCTACAGTTCACAAGCACTAGGGGGCCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGGCATAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCCTATTGCATAATAACAACCGCTATGCAAGCATGGCTTCTCTACCCCTTTATGGTGCTTGCAGCAATAGAGGTCTTGGAATTCAGGCACACTCCATGATCCAGAAGCCCTCTCATCATCATGTGAATGGATTTGTAAGCTCTTATGGACACCACCATGGTTGGTCAAGACCCATCATTGATCAACAACCTGGAATAGCAAAGCTAGCTGAGCCAGATTTTCACAGAACAAAATCAGCATTTTCGTCATCACAAACAAGTGTTGGTAGGTTTGAAATGGTTAATACCTTGATGAATTCTGCAGCCAATAAAGAAATCAGTGGATGTGTGGCTAGTGCTGGAACTCATTTGAAGAgtaataataaagaagaaatgaagCACCTTGATTTATCCCTCAAGCTCTGA | 852 | 0.4296 | MEGLSKKEPHFCDRRSVFSSAPEAPPSPNTPLQHPHEKKQLSVEEEEEEKEPKPIALLDLNVSGDDSCNPEGPELNLITCLDVGSSSNANSSETPLGSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNNRYASMASLPLYGACSNRGLGIQAHSMIQKPSHHHVNGFVSSYGHHHGWSRPIIDQQPGIAKLAEPDFHRTKSAFSSSQTSVGRFEMVNTLMNSAANKEISGCVASAGTHLKSNNKEEMKHLDLSLKL | 283 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g0525 | 283 | Gene3D | Classic Zinc Finger | 87 | 145 | - | - | |
Ssu5g0525 | 283 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 283 | - | - | |
Ssu5g0525 | 283 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 1 | 283 | IPR044246 | GO:0009788 | |
Ssu5g0525 | 283 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Ssu5g0525 | 283 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 105 | 132 | IPR013087 | - | |
Ssu5g0525 | 283 | MobiDBLite | consensus disorder prediction | 37 | 52 | - | - | |
Ssu5g0525 | 283 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 107 | 127 | IPR013087 | - | |
Ssu5g0525 | 283 | SUPERFAMILY | beta-beta-alpha zinc fingers | 102 | 132 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g0525 | Ssu-Chr5 | 11407334 | 11408185 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g0525 | 44 | 283 | C2H2 Transcription Factor Family | AT5G10970 | 41.296 | 2.16e-44 | 150 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ssu5g0525 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g0525 | - | - | gmx:100809569 | 410.223 |