Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0525 ATGGAAGGACTAAGCAAGAAGGAGCCACACTTTTGTGACAGACGAAGCGTCTTCTCTTCTGCACCAGAGGCTCCCCCAAGTCCAAATACCCCACTGCAGCATCCCCATGAAAAGAAACAGCTATCAgttgaggaagaagaggaagaaaaggagCCAAAGCCTATTGCCCTATTGGATTTGAATGTCTCAGGTGATGATTCCTGCAATCCAGAAGGACCAGAACTCAACCTCATCACTTGTTTGGATGTGGGGTCATCATCCAATGCCAATTCATCAGAAACCCCTCTTGGTTCTGATGCAGAGCCAAGAGTGTTCTCTTGCAACTACTGCCACAGGAAGTTCTACAGTTCACAAGCACTAGGGGGCCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGGCATAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCCTATTGCATAATAACAACCGCTATGCAAGCATGGCTTCTCTACCCCTTTATGGTGCTTGCAGCAATAGAGGTCTTGGAATTCAGGCACACTCCATGATCCAGAAGCCCTCTCATCATCATGTGAATGGATTTGTAAGCTCTTATGGACACCACCATGGTTGGTCAAGACCCATCATTGATCAACAACCTGGAATAGCAAAGCTAGCTGAGCCAGATTTTCACAGAACAAAATCAGCATTTTCGTCATCACAAACAAGTGTTGGTAGGTTTGAAATGGTTAATACCTTGATGAATTCTGCAGCCAATAAAGAAATCAGTGGATGTGTGGCTAGTGCTGGAACTCATTTGAAGAgtaataataaagaagaaatgaagCACCTTGATTTATCCCTCAAGCTCTGA 852 0.4296 MEGLSKKEPHFCDRRSVFSSAPEAPPSPNTPLQHPHEKKQLSVEEEEEEKEPKPIALLDLNVSGDDSCNPEGPELNLITCLDVGSSSNANSSETPLGSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNNRYASMASLPLYGACSNRGLGIQAHSMIQKPSHHHVNGFVSSYGHHHGWSRPIIDQQPGIAKLAEPDFHRTKSAFSSSQTSVGRFEMVNTLMNSAANKEISGCVASAGTHLKSNNKEEMKHLDLSLKL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0525 283 Gene3D Classic Zinc Finger 87 145 - -
Ssu5g0525 283 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 283 - -
Ssu5g0525 283 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 283 IPR044246 GO:0009788
Ssu5g0525 283 MobiDBLite consensus disorder prediction 1 52 - -
Ssu5g0525 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Ssu5g0525 283 MobiDBLite consensus disorder prediction 37 52 - -
Ssu5g0525 283 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Ssu5g0525 283 SUPERFAMILY beta-beta-alpha zinc fingers 102 132 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0525 Ssu-Chr5 11407334 11408185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0525 44 283 C2H2 Transcription Factor Family AT5G10970 41.296 2.16e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g0525 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0525 - - gmx:100809569 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0525 5 11407334 11408185 Ssu1g3508 1 89727258 89730657 PCT