Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0523 ATGACCGTGGTGGAGGATCATAGAATGGGTGATCTCAGAGACCAGTTTCCTATAGGAATGCGTGTTCTTGCCGTAGATGATGACCCAACATGTCTCAAGGTTTTGGAGACTCTGTTAAGAAGGTGTCAGTACCACGTAACTGCCACTAAAAATGCAATAACGGCATTGAAgttgttgagagaaaacaaaaacaagtttgacCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGACGACCCAAAGATGGTGATGAAGGGAATTACACATGGGGCTTGTGATTATCTTCTGAAACCCGTTAGAATTGAGGAGCTACAGAACATTTGGCAGCATGTAATCAGGAGGATGAAAGTTGATTCAAAGGAGCGGAACAAAACCAGCAACCGAGACAAAACTAATGCTGATAGCTGCAATGGAAGAGGGTCAGCAGCAACTGGAAATTCGGATCAAAATGGAAAGCCTTCCAAAAAGAGGAAGGATCaggatgaagatgatgatgaggagCATGAGAATGATCATGACAATGAGGACCCATCAACTCAGAAGAAGCCTCGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCCAGTCACCTCCAGAAATATAGACTTTATCTGAAAAGAATTAGCCGTGTGGCGAACCAACAGGCTAATATGGTGGCAGCATTAGGTACAGCAGACTCGTCCTATTTGAGAATGGCTTCTCTGAGTGGGGTTGGACATTTGCAGACATTGACTGGTCCTCAACAGTTTCATAACAATTCTCTCAGACCCTTTCCACCTGGTGGGATGATTGGTAGATTGAACACTTCTGTTGGTCTGAATGTGCACGGGTTGCCTGCTTCAGAAACTCTTCAAATGGGTCTTGCACAAAATTTAAACGACTCCATAAATGATCCACTTAAGTTCCAATCAGCCATAGCATGTGGTAATCATAATGGTATCCAGGGAATGCCAATGTCTGTAGGGCTTGATCAATTGCAATATAATAAGGGTGTTAGTGTTAGTCCTATTCAAAACCTGTCCCCTCTTATTGATGGTAAACCAACTTTTCCCATGTCAAATAAACTCCCAGATCAAATACCAAAAGTAACAATGGGTTGCTCACCCTCTCCAGTTTTGGATATCTCAAACAATGCCTTGATATTGAAAACAAATACTGAAGACACACAAGGGAGTGgagtatatgaaaatttaacttCAGTAGCCTCTCAGCATTCACAATTTTCTCTCCCTTCGCTGAATCATGGCAGGTGTAGTGATATTTGGTCAAGTTCAGTGCAGTCATCTGGGACAAATTCTTACCCTCCAAATGAAACTTCTAGGCAGGCTGCTATGCCTCCTAGTCCTATAGATAACATGTCTTCTGCAACCTTGCAAGGGGGGAATCTGAGTGGTGCTTCATCCATTACTTCACTGTCCAATCAATCTCGTGATTCACTGACAGATATGCAGTCTCAAGGAGTCCTTTTTACAAATAATCCAGGACAAATAAGCAATAATGTGCTATCTCAATGTGCCATCTGGGATCACGATAGTAGTTACCATTCAAATGTTATTGGTAACTCAATAAACTCTCTAATTTCAGTGAACCATGTTGATCCAGAAGGCCATACTTCTATAAGCTCAACCTTCAATAGAAACTTGgactttaatttttgtgatCCCGTACAGATGAAGCATGACGGAATTATGGGATTGAGTGAAGAAAACTCATTGAAACAACAACAGGGGTACATCATGAACCAGCAGAGGTCTCTAAACAGTCGCGCCGCTAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAAcagAAACAAGACAAGGTGAAATTATTGGATGGATCATACTTATGCGACAATAATTACCCTGCAGGGACATCTATGTGA 2064 0.405 MTVVEDHRMGDLRDQFPIGMRVLAVDDDPTCLKVLETLLRRCQYHVTATKNAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVIRRMKVDSKERNKTSNRDKTNADSCNGRGSAATGNSDQNGKPSKKRKDQDEDDDEEHENDHDNEDPSTQKKPRVVWSVELHRKFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISRVANQQANMVAALGTADSSYLRMASLSGVGHLQTLTGPQQFHNNSLRPFPPGGMIGRLNTSVGLNVHGLPASETLQMGLAQNLNDSINDPLKFQSAIACGNHNGIQGMPMSVGLDQLQYNKGVSVSPIQNLSPLIDGKPTFPMSNKLPDQIPKVTMGCSPSPVLDISNNALILKTNTEDTQGSGVYENLTSVASQHSQFSLPSLNHGRCSDIWSSSVQSSGTNSYPPNETSRQAAMPPSPIDNMSSATLQGGNLSGASSITSLSNQSRDSLTDMQSQGVLFTNNPGQISNNVLSQCAIWDHDSSYHSNVIGNSINSLISVNHVDPEGHTSISSTFNRNLDFNFCDPVQMKHDGIMGLSEENSLKQQQGYIMNQQRSLNSRAANNLGSLEDLVSSMMKQKQDKVKLLDGSYLCDNNYPAGTSM 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0523 687 MobiDBLite consensus disorder prediction 480 502 - -
Ssu5g0523 687 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Ssu5g0523 687 MobiDBLite consensus disorder prediction 143 208 - -
Ssu5g0523 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 661 IPR045279 GO:0009736
Ssu5g0523 687 MobiDBLite consensus disorder prediction 154 174 - -
Ssu5g0523 687 Gene3D - 202 265 - -
Ssu5g0523 687 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Ssu5g0523 687 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Ssu5g0523 687 SUPERFAMILY CheY-like 19 144 IPR011006 -
Ssu5g0523 687 PIRSF RR_ARR_type-B 1 686 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ssu5g0523 687 Gene3D - 19 157 - -
Ssu5g0523 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 4 661 - -
Ssu5g0523 687 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Ssu5g0523 687 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Ssu5g0523 687 CDD REC_typeB_ARR-like 22 136 - -
Ssu5g0523 687 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Ssu5g0523 687 SMART REC_2 20 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0523 Ssu-Chr5 11333183 11344517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0523 14 673 Response Regulator Gene Family AT2G25180 43.319 6.57e-137 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu5g0523 Response_reg 6.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0523 - K14491 gmx:100777171 1110.52