Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0522 ATGGCTGCACCACATGATAATGATCCTAGAAGCATAGTTTCCATTTCAAGGGTTGTGTCTGTGCATCCCAAACTTGTGCAACCTCAGAGGGTTTTGACCCTTTCAAATTTGGATAGGCAGTGTCCAAAGCTCATGCACTTAGTGTTCTTTTACAATAACCTATCTCACCAAACGTTGAAGGACTTGTCCCTCAGTTCAGTGTTCTCCAACTTGAAATCTGGCTTGGAAGAGACCTTGACTCTATGGTATCCAGGTGCAGGTAGGCTTAGGCCGAATCAAAATGATGGCAAGCTCAACCTGTGGTGCAACAACCAGGGTGCAGTGCTGGTAGAAGCTGAAACCTCCGTTAAAATCTCACAACTTGGAAACCTCTCTGAGTACAATGAATTCTTTGAGAAGCTGGTTTATAAGCCAGCTTTTGATGGGAATTTCTCAAACATGCCTCTGATTGTTGCTCAGGTTACTAAATTTGGTTGTGGAGGGTATTCAATTGGTATTGGAACAAGCCACTCGTTATTTGACGGGCCAGCAACCTATGACTTCTTGTATGCATGGGCCTCAAATTCTGAAATTGTGAAAGGAAGAAGCAGATCTGATGAGCTTCCAAAACCAGTGCATGAGAGAGGGATACTACTGAGTGGTAGTCTTCAAGCCCCAAGGGGGACTATAAATTTTCCTTCAGACTCAAGTTTAAATGCTAAGCAAGCAAGGGCCATAGCAATAGATCACTTATATCAACTTATAATGCAAACGGCTAGTGGACAAAAGGGCTTTCCGCTGCAAATTGGAGGACCCTCTATTCCAAAGAAGTGTGTTCTTAAAACCTATCATTTTTCAGGTGCAATGATAGAAGACTTGAAAAGGAAACACTTCCCCATGAAAAGAGGTGCTCTTCCTTTCTCAACCTTTGAGGTTCTTGCGGCTCACCTTTGGAAGGCAAGGACCAAAGCTCTAGGGGTGAATAAAGAGAAGCTGGTATGCTTCCAATTCGCGGTGGACACAAGGAACAAGATGTCACCCCCGTTGCCAAAATCTTTCAGTGGAAACGCTTACGTTCTTGCCTCCATTATGATGTCAGTGGGAGAATTGGAACATGCAAGCCACGAAGGCATCgttgagaaaataagagaagcCAAGAACTGTGTAAACCATGACTACGTGAAAGCCTACGTTGATGCCCTAGATGGACCACAACAAGCTTCTTCTCTCCCTCCACTGAAGGAGCTAACTTTGGTTTCTGATTGGACAAGAATGCCATTTCACAACATTGAGTTCTTTCGTGGAAAAGCAGCCTATGCATGCCCTCTTGCCACTCCAATTCCACAGGTCGCATACTTCATGCAAAGTCCTAGTGACAACAAGGGCGTTGACGTGAGAATTGGTTTTGAAGCCCAAAATATAAGTGCTTTTACTGAATGCTTTTTAAGCATAGCGTGA 1437 0.4349 MAAPHDNDPRSIVSISRVVSVHPKLVQPQRVLTLSNLDRQCPKLMHLVFFYNNLSHQTLKDLSLSSVFSNLKSGLEETLTLWYPGAGRLRPNQNDGKLNLWCNNQGAVLVEAETSVKISQLGNLSEYNEFFEKLVYKPAFDGNFSNMPLIVAQVTKFGCGGYSIGIGTSHSLFDGPATYDFLYAWASNSEIVKGRSRSDELPKPVHERGILLSGSLQAPRGTINFPSDSSLNAKQARAIAIDHLYQLIMQTASGQKGFPLQIGGPSIPKKCVLKTYHFSGAMIEDLKRKHFPMKRGALPFSTFEVLAAHLWKARTKALGVNKEKLVCFQFAVDTRNKMSPPLPKSFSGNAYVLASIMMSVGELEHASHEGIVEKIREAKNCVNHDYVKAYVDALDGPQQASSLPPLKELTLVSDWTRMPFHNIEFFRGKAAYACPLATPIPQVAYFMQSPSDNKGVDVRIGFEAQNISAFTECFLSIA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0522 478 Gene3D - 262 476 IPR023213 -
Ssu5g0522 478 Pfam Transferase family 19 472 - -
Ssu5g0522 478 Gene3D - 10 221 IPR023213 -
Ssu5g0522 478 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 476 - -
Ssu5g0522 478 PANTHER BRASSINOSTEROID-RELATED ACYLTRANSFERASE 1 10 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0522 Ssu-Chr5 11325842 11331123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0522 13 477 Monolignol Biosynthesis Gene Families AT5G48930 23.158 2.90e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0522 K15400 - gmx:100779295 862.833