Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0521 ATGGCAAACTTCCACCGCAACAACGTCGGGAACCTGGTCCTCGGCCACCACCACGCTTCCAAGTCCGCCTCCGTGGCCGGCCACTTCCGCCTATGGAACTCCCACTCCGCCGCCTCCCTCCGCCGCCTCATCTTCGACGCCGTCAGCTGCGGCGCCAGCTCGCGCTACACCGAGAGATCCAACTCCGACTCCGAgaaacaccaccaccaccaccaacaaaaacagcaccaccaacaacaacaacgtaAGGCGAACCCGAATGTTCGGTCGGAGAAGCTCTCGGATCTTCTGAGCATTGCGGAGGTGGAGGCTGACGCGGAGACGCAGAAGAAGGAGGAGAAGCTCGACGAGCTGAAGCGCCTCGTCAAGGAGCTTCATCGCGAAGAAGAGGACTCGACGAAGAAAAGAGAAGCTGCGACGAAAGTGAGGTTACTAGCGAAAGAGGGTTTGGAAGTAAGAGGAACGTTGGCGATGCTTGGCGCCATTCCTCCGCTCGTCGCAATGCTCGATGCTTCCCAAGACGACGTCGAATCGCTCGTCGCTTCGCTCTACGCGCTGCTCAACCTCGGAATCGGAAACGACGCGAATAAAGCGGCTATTGTGAAAGTTGGGTCTGTTGAGAAGATGCTGAAGTTGATTGAATCTCCAGACGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTCGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTGCAGTTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGATAATAAGAGTAGTCCCCAAGCCAAGCAAGATGCTCTGCGAGCGCTGTACAATCTTTCAATCTTCCCAGCCAACGTTGCATTCATTTTGGAAACCGGTTTGGTTGTGTTTCTGGTGAACTCCATAGGGGACATGGAAGTAACTGAAAGGACCCTTGCAATTCTCAGCAATTTGGTGTCGATCCGGGAGGGTAGAAAGGCGATCAGCGCGGTGCCGGACGCAATCCCGATCCTGGTGGATGTGTTGAATTGGACGGATTCGCTGGAGTGCCAGGAGAAGGCGTCGTACATTTTGATGCTTATGGCACACAAGTCCTATGGTGACAAGCAGGCCATGATTGAGGCAGGTATTGCGTCATCACTGCTTGAACTGTCCCTTTTGGGTACCACATTGGCCCAGAAAAGGGCATCAAGGATATTGGAGATTTTGAGGGTGGACAAAGGGAAGCAGGTTTCTGGGAGCTATGGCTTGGGTGCAGCTGTCTCTGCCCCTATTTGTGGCTCTTCGTCGGCATGTGCGAAGCCGGATGGAGGAGGGAAAGAGTGTTTTGAGGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAGAGGGCCAACTTGCCTCAAGATATTGTGCCATCAGATCATTTTAAGTCGCTCACTTCAAGTTCGACTTCAAAGAGCCTTCCATTTTGA 1509 0.503 MANFHRNNVGNLVLGHHHASKSASVAGHFRLWNSHSAASLRRLIFDAVSCGASSRYTERSNSDSEKHHHHHQQKQHHQQQQRKANPNVRSEKLSDLLSIAEVEADAETQKKEEKLDELKRLVKELHREEEDSTKKREAATKVRLLAKEGLEVRGTLAMLGAIPPLVAMLDASQDDVESLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSAAVSFLVRTLQSLDNKSSPQAKQDALRALYNLSIFPANVAFILETGLVVFLVNSIGDMEVTERTLAILSNLVSIREGRKAISAVPDAIPILVDVLNWTDSLECQEKASYILMLMAHKSYGDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQVSGSYGLGAAVSAPICGSSSACAKPDGGGKECFEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0521 502 Coils Coil 101 138 - -
Ssu5g0521 502 Coils Coil 443 463 - -
Ssu5g0521 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 502 - -
Ssu5g0521 502 SUPERFAMILY ARM repeat 117 403 IPR016024 -
Ssu5g0521 502 Gene3D - 88 261 IPR011989 -
Ssu5g0521 502 Gene3D - 262 414 IPR011989 -
Ssu5g0521 502 MobiDBLite consensus disorder prediction 55 90 - -
Ssu5g0521 502 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 502 - -
Ssu5g0521 502 SMART arm_5 149 191 IPR000225 GO:0005515
Ssu5g0521 502 SMART arm_5 324 363 IPR000225 GO:0005515
Ssu5g0521 502 SMART arm_5 193 236 IPR000225 GO:0005515
Ssu5g0521 502 SMART arm_5 282 320 IPR000225 GO:0005515
Ssu5g0521 502 SMART arm_5 237 281 IPR000225 GO:0005515
Ssu5g0521 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 204 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0521 Ssu-Chr5 11263257 11266019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0521 128 424 U-box Gene Family AT1G24330 30.892 7.48e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0521 - - gmx:100788575 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0521 5 11263257 11266019 Ssu1g3517 1 89920844 89922424 PCT