Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0513 ATGGAGGAGATGTCCTTTGTGGTTGCAGTGCCATTAAGAGTAGGTAATTGTAATTCAGTCTGTGATAACCCAACCATAGCTCCCCACATGGATGTATCCAGATTTAAGCTGATGACGGATACAGGGTTGTTATCTAATTCTGTAACTAAGGTTTTCACTGAGACGGATGCAGGTTCTGATGATTGTCATGATAGTGGCAATTTGGAGGATGAAGTTGGTATTACTGAAGCCATACCACCAAAACAGGATAGGGAAGGAGAGAGTCTTATGTTGGATATGATATCCCAAAATAGAAGCACTTTGGTTGCTGGTGATGAAGTGTTAGCTGCGGAAATTGAAGAGGAGGATTTCTTGTCATTGGAAGGTGACCAGGTTGTTGATAGCTCGTGTTCTCTTTTGGCGGCCAGTGAGAACAGTAGTGTGTGGGGGGAGGAGTCCTTCTGCTTTGATGCTACCTCAGATGTTGGGACACTGTGTTCTGCAGACGTAGAGAAGAGCATCTGCGCAGTCAATATTGTTGCCAAGGCTGTTGAGTTGGGGGAGCCAAATGTTGACACAGATATTATGACTGAACCTCTTGCTGTGGCAGCGAGCCTTGAAGAAGAGAATGAAGTTAGATCTGGCACAAAGACTTCTGCTGCTGTTCTTCATCAGTTGCCTCAGGAAAACGGGGTGAGTGGAACGGTTGGTCGGAGTGTTTTTGAATTGGACTATACCCCACTTTATGGATTCATATCTCTGTGTGGAAGAAGGCCTGAGATGGAAGATGCAGTTGCAACTGTAcctagatttttgaaaattcctaTTCAAATGCTAATTGGCGATCGGGTACTAGATGGAATAAACAAGAGTTTTAGTCAGCAGATGACCCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCGTGATCGTATCCATTTGGCGTTGGCTGAGGAAATAGAGTTTGTCAAGGAAGGTCTAATCAATGGAAGTATCAAGGATGGTTGTCAAGATCAGTGGAAAAAAGCTTTCACCAATTGTTTCTTGAAGGTTGATGCTGAAGTTGGAGGAAAAGTTAATAATGAACCTGTTGCCCCAGAAACTGTTGGCTCCACTGCTGTTGTCGCTGTTGTTTGTTCATCTCATATCATGGTTGCAAATTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGCAAAGAACCCATGGCATTATCAGTGGACCATAAACCTAACCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAGGTGTTTCAATGGAATGGCCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGCGATAGATATTTGAAGCCGTGGATTATTCCTGAACCAGAAGTTACGTTTCTTCCCCGTACAAAAGACGATGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTTATGACGAACGAAGAGGTGTGTGACCTTGCTCGGCGACGAATACTTCTCTGGTACAAGAAAAATGACTTGGAACAACCCTCATCAGAAAGGGGAGAGGGCATTGATCCTGCTGCACAAGCAGCAGTAGAATGCCTATCAAACCGCGCCCTTCAGAAAGGAAGCAAAGATAACATCACTGTGATTGTGGTTGATTTGAAacctcaaagaaaatataagagcaAGACATGA 1671 0.4321 MEEMSFVVAVPLRVGNCNSVCDNPTIAPHMDVSRFKLMTDTGLLSNSVTKVFTETDAGSDDCHDSGNLEDEVGITEAIPPKQDREGESLMLDMISQNRSTLVAGDEVLAAEIEEEDFLSLEGDQVVDSSCSLLAASENSSVWGEESFCFDATSDVGTLCSADVEKSICAVNIVAKAVELGEPNVDTDIMTEPLAVAASLEEENEVRSGTKTSAAVLHQLPQENGVSGTVGRSVFELDYTPLYGFISLCGRRPEMEDAVATVPRFLKIPIQMLIGDRVLDGINKSFSQQMTHFFGVYDGHGGSQVAKYCRDRIHLALAEEIEFVKEGLINGSIKDGCQDQWKKAFTNCFLKVDAEVGGKVNNEPVAPETVGSTAVVAVVCSSHIMVANCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVFQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRTKDDECLILASDGLWDVMTNEEVCDLARRRILLWYKKNDLEQPSSERGEGIDPAAQAAVECLSNRALQKGSKDNITVIVVDLKPQRKYKSKT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0513 556 SMART PP2C_4 229 544 IPR001932 -
Ssu5g0513 556 CDD PP2Cc 242 546 IPR001932 -
Ssu5g0513 556 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 124 556 - -
Ssu5g0513 556 SUPERFAMILY PP2C-like 234 548 IPR036457 -
Ssu5g0513 556 Gene3D - 228 556 IPR036457 -
Ssu5g0513 556 ProSitePatterns PPM-type phosphatase domain signature. 292 300 IPR000222 GO:0043169
Ssu5g0513 556 Pfam Protein phosphatase 2C 281 539 IPR001932 -
Ssu5g0513 556 ProSiteProfiles PPM-type phosphatase domain profile. 241 546 IPR001932 -
Ssu5g0513 556 PANTHER ALPHABET, ISOFORM E-RELATED 124 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0513 Ssu-Chr5 10999232 11002427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0513 1 556 PP2C-type Phosphatase Gene Family AT1G17550 46.831 8.83e-159 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0513 K14497 - gmx:100805281 978.778