Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0511 ATGTCGACGGTGTACGTTCTAGAACCGCCGACGAAGGGGAAAGTGGTGGTGAACACCACGCGCGGGCCTTTGGACATTGAGTTGTGGCCAAAAGAGGCTCCGAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAGGCTACTACGAAAACACCATCTTCCACCGCGTCATGAAGGACTTCCTCGTCCAAGGTGGCGACCCCACCGGCACCGGTACTGgaGGTGAAAGTATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTTTAAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCCGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGACCGTTGTGACTGGCTGGATCGCAAGCATACCATTTTCGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCATAAGATATTATCAGTTGAgGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCAGATGGAAGCTAAAGCTGATACAGAAAGTAAAGAGCCAAGGAAGAAAGGCGTAAAAAAATTGAACTTGCTTTCATTTGgggaagaagctgaagaagaggaaaaggaatTGTCATCAGTGAAGCAAAAGATTAAGAGCAGTCACGATGTCTTGAACGATCCTCGTCTTTTAAAGGAAGAAACTCTTAATAATGAACTGAGTTCATCTGATGGTAAATCAAGAAGAGATCTGCAGTTATCTGTAAGGGATGCGCTTAACTCAAACAAAGAAGAGCCTCAGAAAGATTCTGAAGCTGGTAACATGGCTCATCTTGATTCCAGTGACGATGATGAAGCAAATTTTGATGCAAGAATGCGTATGCAAATACTCAAAAAGCGGAAGGAGTTGGGTGATCTCCCTCCCAAGCCAAAGTTGCAAAATGCAGGAAGATCCAGTCCAGAGAACCATGATACGTCAGCAGTCagGTCCAATGCTGTAAGTGTTGATGAGGATCAACCAAAGGTGGAAAAATTGTCCTTGAAGAAAAAGGGAGTTGGATCTGAAGCAAGAGCTGAACGAATGGCTATTGCAGATGCAGATTTACAGCTATTGAATGAATCTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCAGACTTCAAGGACGTGAAGATGAaGTTCTGgcaaaacttgaaaaatttaagaattcttTATCAGCAAAGGAGACACCCCCAACTGGTGAATCTGGAGATGTTAATAATGAGGAATTGTCTGACTGGAGAggtgttaatttaaaatttgccCGTGAGGCCGGCAAGGACCGCATGTCTCGCAATGAGGACCCAAATGACTATGTTGTGCACGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTTAATAGGATGATAGCCAAACAAAAGAGACGAGAACGGGAGTGGGCTGGGAGATCCCTTACTTGA 1491 0.4205 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLEGYYENTIFHRVMKDFLVQGGDPTGTGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPHKILSVEVLWNPFEDIVPRTLQKSQMEAKADTESKEPRKKGVKKLNLLSFGEEAEEEEKELSSVKQKIKSSHDVLNDPRLLKEETLNNELSSSDGKSRRDLQLSVRDALNSNKEEPQKDSEAGNMAHLDSSDDDEANFDARMRMQILKKRKELGDLPPKPKLQNAGRSSPENHDTSAVRSNAVSVDEDQPKVEKLSLKKKGVGSEARAERMAIADADLQLLNESERGRQLQKQKKRRLQGREDEVLAKLEKFKNSLSAKETPPTGESGDVNNEELSDWRGVNLKFAREAGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKRREREWAGRSLT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0511 496 Coils Coil 206 226 - -
Ssu5g0511 496 MobiDBLite consensus disorder prediction 395 414 - -
Ssu5g0511 496 MobiDBLite consensus disorder prediction 270 316 - -
Ssu5g0511 496 MobiDBLite consensus disorder prediction 324 342 - -
Ssu5g0511 496 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 202 IPR044666 -
Ssu5g0511 496 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 CDD cyclophilin_CeCYP16-like 8 179 - -
Ssu5g0511 496 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 202 - -
Ssu5g0511 496 MobiDBLite consensus disorder prediction 267 350 - -
Ssu5g0511 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 MobiDBLite consensus disorder prediction 380 433 - -
Ssu5g0511 496 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Ssu5g0511 496 Gene3D - 2 182 IPR029000 -
Ssu5g0511 496 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Ssu5g0511 496 MobiDBLite consensus disorder prediction 416 430 - -
Ssu5g0511 496 SUPERFAMILY Cyclophilin-like 14 181 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0511 Ssu-Chr5 10921744 10933993 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0511 9 172 U-box Gene Family AT5G67530 48.171 1.24e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0511 K12737 - gmx:100793148 855.514