Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0510 ATGGAATTATGGGTAAGAGACACAAACTGTGGAGGATTCAAAGGTCCCTATTGCGGCATCTCCCTCAAGCTTCATGAAGAGGAGCATGTAGACCGCATGGGCTTCATCCTCAAAGTCTCTGCCATCAACACCAAGCACATCAAGGTTGACAAAGAAATGCTTTGCAGGCTATTCAAACTTGGAAGGGTTGGTTGGaagaaaaagtcGATAGTGTACGTTCTAGAACCTTTGACAAAGGGGAAAGTGGTGGTGAACACCACACGCGAGCCTTTGGACATTGAGCTATGGTCGAAACAGGCTCCAAAAGCCATGAGGAACTTTGTGCAGCTTTGCCTTGAAAACTATTACGACAACACAATCTTCCACTACATCATCAAGGGCTTCCTCATCCAAGGTGGTGACCCTACTAGGATTGACACCGGTATGTCTTATGAGCTTTAA 441 0.4512 MELWVRDTNCGGFKGPYCGISLKLHEEEHVDRMGFILKVSAINTKHIKVDKEMLCRLFKLGRVGWKKKSIVYVLEPLTKGKVVVNTTREPLDIELWSKQAPKAMRNFVQLCLENYYDNTIFHYIIKGFLIQGGDPTRIDTGMSYEL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0510 146 SUPERFAMILY Cyclophilin-like 70 141 IPR029000 -
Ssu5g0510 146 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 72 141 IPR044666 -
Ssu5g0510 146 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Ssu5g0510 146 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Ssu5g0510 146 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 72 141 - -
Ssu5g0510 146 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 138 IPR002130 GO:0000413|GO:0003755
Ssu5g0510 146 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 91 146 IPR002130 GO:0000413|GO:0003755
Ssu5g0510 146 Pfam Ribosomal S17 14 56 IPR001210 GO:0003735|GO:0005840|GO:0006412
Ssu5g0510 146 Gene3D - 64 145 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0510 Ssu-Chr5 10906920 10913035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0510 76 141 U-box Gene Family AT5G67530 46.970 1.99e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0510 K12737 - gmx:100793148 124.02