Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0509 ATGTCTTCCCATGGTGGTGGCACCACGCCACCCTTAAATGTCACCATGGTGGCTGTAGACAAAGACAAGAACAGTAGCCACGCCTTCCGTTGGACAACTAAACACATCGACAACCCAGTCATCATTGCGGTCCATGTCAAGCACAAAAACATTCCTCATCAGGGCACCAATGTTTTTCCTCCCGACGAAGACGATATAGCCCATGTTTTCCACCCCTTACGACAAATGTGTCATCCCAACGTCATCAAGTTGAAAGAAGCCGTAATCGATGATAGTGATGTTGTCAGAGGAATTGTGGAATATGCACATAGAAATCGCGTCAATACTATAGTCGTTGGTGCACCCTACTCGACCAAGAATACTTGGGCAAGGTCTCTAAACCTGAGGAGTGGAACCAAAAAATTTAAAGGCCAACATGTGTCAACAGGCGTAATGAAATCAGCCCCAGATTATACTTCAGTGTACGTAATTTCAAAAGGGAAGATAGTGGGAGCTCGACCAGCAATACGCCCAATGGTAAACGTGGTTGCACCACCAAAAGAAAATGGAGTAAGGACACATGCACTTAGAAGAGGGAGCACCAATGGAAGATCAGGAAGATCACCTCTACCTGAAATGTCAAGGTGTTCTTCAGCTGGTCAGTCAATGGAACAGAGGTCACTATTTAGCCACAGCTCGGGTGAAAGTGACTCTTCAGGGTCGCATATGTTTGGGTCAATAGAGGGAACTAAACAAGATCGTGGTTTATGCTTTCCACCAGATTCCCAATTCTCAGGAGATATGGAAGCTGAGATGAAAAAATTGAGGCTCAAACTGAAGCAAACTATGGACATGTACAGCACAGCTTGCAAAGAAGCAATCTCAGCCCAAAACAAGGCTAAAGAGATTAACAAATGGAAACTGGAGGAGGAACGTATAGTTGAGCAAACTAAGCTGTCTAAAGAGGCAGCTCTTGCACTAGCAGAAAAGGAGAAAGTTAAAGCCAAAGCTGCCTTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAAAGAAGATTTCATGCAGAGATGAAGGCCAGGAGAGAGGCACAAGAAAAGAATCGGGCATTAAATCAGTTGGCTAGCAAGGATATTCGATACAGAAAATACACTATAAACGATATTGAAGATGCTACTCAAAAGTTCTCCCCATCATTGAAGATAGGTGAAGGTGGATATGGACCTGTGTTCAAAGGCCAACTTGATCACACCCCCGttgcaatcaaaattttaaacccTGATGCTTCCCATGGCAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTCGGTGCGTGTCCCGAGTATGGATGCTTAGTGTATGAGTACTTGGACAATGGTAGCTTAGAAGATagattattgatgaaaaatgaCAGCCCTCCTATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATAGCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAACCAATTGTGCACCGGGACCTTAAACCCGCCAACATTCTCCTAGACAAGAACTTTTTGAGCAAAATAAGTGATGTTGGTCTTGCAAGACTAGTGCCGCCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCAGCTGCTGGAACATTTTGTTACATTGACCCTGAGTACCAACAAACAGGAATGTTGACAACAAAATCAGACATATACTCCTTAGGGATAATGCTACTACAAATAATCACAGCCAAGCCTCCAATGGGGCTTGCTCATCATGTTAGGAGGGCAATTGAAAAGGGAACATTTTCAGATATGCTTGATCCTGTGGTCACTGATTGGCCAATTGAAGAGGCTCTAGCATTTGCCAAACTCTCATTGCGTTGTGCAGAACTCAGCAAAAAGGACAGGCCTGATCTTGCATCAGTGGTGGTGCTAGAGCTTAACCGTTTAAGGGACTTTGGGTTCACATCACAGAACAATCAGAACCGTAGCCACTCGCCACGCCTTCCCATGCCTACGCGAAGTCCACGATCAAATCCATAA 2067 0.4422 MSSHGGGTTPPLNVTMVAVDKDKNSSHAFRWTTKHIDNPVIIAVHVKHKNIPHQGTNVFPPDEDDIAHVFHPLRQMCHPNVIKLKEAVIDDSDVVRGIVEYAHRNRVNTIVVGAPYSTKNTWARSLNLRSGTKKFKGQHVSTGVMKSAPDYTSVYVISKGKIVGARPAIRPMVNVVAPPKENGVRTHALRRGSTNGRSGRSPLPEMSRCSSAGQSMEQRSLFSHSSGESDSSGSHMFGSIEGTKQDRGLCFPPDSQFSGDMEAEMKKLRLKLKQTMDMYSTACKEAISAQNKAKEINKWKLEEERIVEQTKLSKEAALALAEKEKVKAKAALEAAEEAIKMVEKEAQRRFHAEMKARREAQEKNRALNQLASKDIRYRKYTINDIEDATQKFSPSLKIGEGGYGPVFKGQLDHTPVAIKILNPDASHGRRQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYLDNGSLEDRLLMKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDKNFLSKISDVGLARLVPPSVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVRRAIEKGTFSDMLDPVVTDWPIEEALAFAKLSLRCAELSKKDRPDLASVVVLELNRLRDFGFTSQNNQNRSHSPRLPMPTRSPRSNP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0509 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Ssu5g0509 688 SMART serkin_6 392 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0509 688 Gene3D Transferase(Phosphotransferase) domain 1 465 674 - -
Ssu5g0509 688 SUPERFAMILY Protein kinase-like (PK-like) 373 651 IPR011009 -
Ssu5g0509 688 Pfam Protein tyrosine and serine/threonine kinase 397 651 IPR001245 GO:0004672|GO:0006468
Ssu5g0509 688 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 687 - -
Ssu5g0509 688 Coils Coil 318 345 - -
Ssu5g0509 688 PANTHER OS02G0152300 PROTEIN 9 687 - -
Ssu5g0509 688 Gene3D Phosphorylase Kinase; domain 1 369 464 - -
Ssu5g0509 688 MobiDBLite consensus disorder prediction 188 239 - -
Ssu5g0509 688 Coils Coil 353 373 - -
Ssu5g0509 688 ProSiteProfiles Protein kinase domain profile. 392 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0509 688 MobiDBLite consensus disorder prediction 664 688 - -
Ssu5g0509 688 MobiDBLite consensus disorder prediction 183 249 - -
Ssu5g0509 688 Gene3D HUPs 9 158 IPR014729 -
Ssu5g0509 688 CDD STK_N 14 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0509 Ssu-Chr5 10896631 10901410 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0509 84 662 Receptor kinase-like Gene Family AT5G12000 58.185 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu5g0509 PK_Tyr_Ser-Thr 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0509 - - gmx:100786386 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0509 5 10896631 10901410 Ssu5g0509 5 10896631 10901410 ECH