Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g0509 | ATGTCTTCCCATGGTGGTGGCACCACGCCACCCTTAAATGTCACCATGGTGGCTGTAGACAAAGACAAGAACAGTAGCCACGCCTTCCGTTGGACAACTAAACACATCGACAACCCAGTCATCATTGCGGTCCATGTCAAGCACAAAAACATTCCTCATCAGGGCACCAATGTTTTTCCTCCCGACGAAGACGATATAGCCCATGTTTTCCACCCCTTACGACAAATGTGTCATCCCAACGTCATCAAGTTGAAAGAAGCCGTAATCGATGATAGTGATGTTGTCAGAGGAATTGTGGAATATGCACATAGAAATCGCGTCAATACTATAGTCGTTGGTGCACCCTACTCGACCAAGAATACTTGGGCAAGGTCTCTAAACCTGAGGAGTGGAACCAAAAAATTTAAAGGCCAACATGTGTCAACAGGCGTAATGAAATCAGCCCCAGATTATACTTCAGTGTACGTAATTTCAAAAGGGAAGATAGTGGGAGCTCGACCAGCAATACGCCCAATGGTAAACGTGGTTGCACCACCAAAAGAAAATGGAGTAAGGACACATGCACTTAGAAGAGGGAGCACCAATGGAAGATCAGGAAGATCACCTCTACCTGAAATGTCAAGGTGTTCTTCAGCTGGTCAGTCAATGGAACAGAGGTCACTATTTAGCCACAGCTCGGGTGAAAGTGACTCTTCAGGGTCGCATATGTTTGGGTCAATAGAGGGAACTAAACAAGATCGTGGTTTATGCTTTCCACCAGATTCCCAATTCTCAGGAGATATGGAAGCTGAGATGAAAAAATTGAGGCTCAAACTGAAGCAAACTATGGACATGTACAGCACAGCTTGCAAAGAAGCAATCTCAGCCCAAAACAAGGCTAAAGAGATTAACAAATGGAAACTGGAGGAGGAACGTATAGTTGAGCAAACTAAGCTGTCTAAAGAGGCAGCTCTTGCACTAGCAGAAAAGGAGAAAGTTAAAGCCAAAGCTGCCTTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAAAGAAGATTTCATGCAGAGATGAAGGCCAGGAGAGAGGCACAAGAAAAGAATCGGGCATTAAATCAGTTGGCTAGCAAGGATATTCGATACAGAAAATACACTATAAACGATATTGAAGATGCTACTCAAAAGTTCTCCCCATCATTGAAGATAGGTGAAGGTGGATATGGACCTGTGTTCAAAGGCCAACTTGATCACACCCCCGttgcaatcaaaattttaaacccTGATGCTTCCCATGGCAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTCGGTGCGTGTCCCGAGTATGGATGCTTAGTGTATGAGTACTTGGACAATGGTAGCTTAGAAGATagattattgatgaaaaatgaCAGCCCTCCTATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATAGCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAACCAATTGTGCACCGGGACCTTAAACCCGCCAACATTCTCCTAGACAAGAACTTTTTGAGCAAAATAAGTGATGTTGGTCTTGCAAGACTAGTGCCGCCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCAGCTGCTGGAACATTTTGTTACATTGACCCTGAGTACCAACAAACAGGAATGTTGACAACAAAATCAGACATATACTCCTTAGGGATAATGCTACTACAAATAATCACAGCCAAGCCTCCAATGGGGCTTGCTCATCATGTTAGGAGGGCAATTGAAAAGGGAACATTTTCAGATATGCTTGATCCTGTGGTCACTGATTGGCCAATTGAAGAGGCTCTAGCATTTGCCAAACTCTCATTGCGTTGTGCAGAACTCAGCAAAAAGGACAGGCCTGATCTTGCATCAGTGGTGGTGCTAGAGCTTAACCGTTTAAGGGACTTTGGGTTCACATCACAGAACAATCAGAACCGTAGCCACTCGCCACGCCTTCCCATGCCTACGCGAAGTCCACGATCAAATCCATAA | 2067 | 0.4422 | MSSHGGGTTPPLNVTMVAVDKDKNSSHAFRWTTKHIDNPVIIAVHVKHKNIPHQGTNVFPPDEDDIAHVFHPLRQMCHPNVIKLKEAVIDDSDVVRGIVEYAHRNRVNTIVVGAPYSTKNTWARSLNLRSGTKKFKGQHVSTGVMKSAPDYTSVYVISKGKIVGARPAIRPMVNVVAPPKENGVRTHALRRGSTNGRSGRSPLPEMSRCSSAGQSMEQRSLFSHSSGESDSSGSHMFGSIEGTKQDRGLCFPPDSQFSGDMEAEMKKLRLKLKQTMDMYSTACKEAISAQNKAKEINKWKLEEERIVEQTKLSKEAALALAEKEKVKAKAALEAAEEAIKMVEKEAQRRFHAEMKARREAQEKNRALNQLASKDIRYRKYTINDIEDATQKFSPSLKIGEGGYGPVFKGQLDHTPVAIKILNPDASHGRRQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYLDNGSLEDRLLMKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDKNFLSKISDVGLARLVPPSVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVRRAIEKGTFSDMLDPVVTDWPIEEALAFAKLSLRCAELSKKDRPDLASVVVLELNRLRDFGFTSQNNQNRSHSPRLPMPTRSPRSNP | 688 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g0509 | 688 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 510 | 522 | IPR008271 | GO:0004672|GO:0006468 | |
Ssu5g0509 | 688 | SMART | serkin_6 | 392 | 656 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Ssu5g0509 | 688 | Gene3D | Transferase(Phosphotransferase) domain 1 | 465 | 674 | - | - | |
Ssu5g0509 | 688 | SUPERFAMILY | Protein kinase-like (PK-like) | 373 | 651 | IPR011009 | - | |
Ssu5g0509 | 688 | Pfam | Protein tyrosine and serine/threonine kinase | 397 | 651 | IPR001245 | GO:0004672|GO:0006468 | |
Ssu5g0509 | 688 | PANTHER | ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE | 9 | 687 | - | - | |
Ssu5g0509 | 688 | Coils | Coil | 318 | 345 | - | - | |
Ssu5g0509 | 688 | PANTHER | OS02G0152300 PROTEIN | 9 | 687 | - | - | |
Ssu5g0509 | 688 | Gene3D | Phosphorylase Kinase; domain 1 | 369 | 464 | - | - | |
Ssu5g0509 | 688 | MobiDBLite | consensus disorder prediction | 188 | 239 | - | - | |
Ssu5g0509 | 688 | Coils | Coil | 353 | 373 | - | - | |
Ssu5g0509 | 688 | ProSiteProfiles | Protein kinase domain profile. | 392 | 658 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Ssu5g0509 | 688 | MobiDBLite | consensus disorder prediction | 664 | 688 | - | - | |
Ssu5g0509 | 688 | MobiDBLite | consensus disorder prediction | 183 | 249 | - | - | |
Ssu5g0509 | 688 | Gene3D | HUPs | 9 | 158 | IPR014729 | - | |
Ssu5g0509 | 688 | CDD | STK_N | 14 | 160 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g0509 | Ssu-Chr5 | 10896631 | 10901410 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g0509 | 84 | 662 | Receptor kinase-like Gene Family | AT5G12000 | 58.185 | 0.0 | 685 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-IXb | Ssu5g0509 | PK_Tyr_Ser-Thr | 2.9e-38 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g0509 | - | - | gmx:100786386 | 1066.99 |