Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0507 ATGACTACTAAAAAGATTACATGGAAGTCTACGATCTTGATCTTAAGTTGTTACAAGGTTAAGTACCCCTTGGAGGAATCAGAGAAACAGGCTTTAAAACAAGGTTCTTTCCAGAGGCTATGCCTATCCGATGTAAGCAATTCAAGCTCCAGTCAGGCCATTGAAGATCTTTCAATTTCTCTGGCTGGCTCAAAACTCTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAATAATTTCTCATGGAGTAACATGCTAGGTGAAGGTGGGTTTGGACCTGTGTACAAGGGTTTTGTTGATGACAAGCTTAGGCCTGGTTTGAAAGCTCAGACTGTAGCTGTGAAAAGATTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGCTACTGTTATGAGGATGAGCACAGGCTTTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAaGATACTCTGCTGCCATGCCATGGTCAACTAGGATGAAAATTGCATTAGGAGCTGCCAAGGGTCTGGCCTTCCTTCATGAAGCAGATAAGCCTGTAATATACCGGGATTTCAAAGCTTCAAACATTTTACTAGACTCAGATTTCACAGCTAAACTCTCAGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACATGTAACAACACGCATAATGGGAACACAAGGCTATGCCGCTCCTGAGTACATCATGACAGGTCACCTTACAACAAAGAGTGACGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTTACAGGAAGACGGGTAGTGGATAAGTCTCGGTCGAATGGAAAGAAGAGCTTAGTGGAATGGGCAAGGCCTTTGTTGAGAGATCAAAAAAAGGTGTATAGCATCATAGACCGTAGACTAGAAGGGCAATTTCCCATGAAAGGAGCCATGAAAATTGCTATGTTGGCTTTTAAATGCTTGAGTCATCACCCAAATCCAAGGCCCACTATGAGTGATGTGGTGAAGGTATTGGAGCCACTTCAGGACTTTGATGATGTTTTCAGTTGGACCATTTGTGTATGTTGCCGTTAG 1134 0.4356 MTTKKITWKSTILILSCYKVKYPLEESEKQALKQGSFQRLCLSDVSNSSSSQAIEDLSISLAGSKLYAFTLEELREATNNFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGKKSLVEWARPLLRDQKKVYSIIDRRLEGQFPMKGAMKIAMLAFKCLSHHPNPRPTMSDVVKVLEPLQDFDDVFSWTICVCCR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0507 377 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Ssu5g0507 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Ssu5g0507 377 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Ssu5g0507 377 PANTHER KINASE 1B 21 366 - -
Ssu5g0507 377 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Ssu5g0507 377 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0507 377 CDD STKc_IRAK 87 361 - -
Ssu5g0507 377 PANTHER OS01G0588500 PROTEIN-RELATED 21 366 - -
Ssu5g0507 377 SUPERFAMILY Protein kinase-like (PK-like) 58 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0507 Ssu-Chr5 10880009 10882217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0507 69 358 Glycoside Hydrolase AT3G07070 53.242 4.54e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g0507 PK_Tyr_Ser-Thr 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0507 - - gmx:100802636 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0507 5 10880009 10882217 Ssu5g0507 5 10880009 10882217 ECH
Ssu6g0585 6 9138974 9141216 Ssu5g0507 5 10880009 10882217 ECH
Ssu4g3129 4 79347237 79349045 Ssu5g0507 5 10880009 10882217 ECH