Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0502 atggTGAAACCGGCCATGGTTGGTGTTGATTCTTCCACTTGTAATGACTCATGTTCCACTACCAACAACACTAGTAGTAGTAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTATCTGAGATTAGGCTTCCCAATAGCCGCGAGCGCATATGGTTGGGCTCTTACGACACCCAAGAGAAGGCCGCTAGGGCCTTCGATGCTGCCCTTTACTGCCTACGTGGCAAAAGTGCCAGTTTCAATTTCCCTGACACTCCTCACAACTTGGAGATCAATGTGGTGCTGCCTCACCACCAATCTCTTTCCCCACAGGAGATTCAAGAGGTTGCTGCCAAGTTTGCCAACAACGACCCACCTTTGGGGAGTGGTGCTCGGGAAGAGGAACCATCATCAGAGTCACAAAGTGAGTCTAAGTCCAACAACACAACAGAGACCACCTTCGCTAATATTTATGGTGGGACTGCGCAAGTGGACCAAGGGGACTGCTGGGACACCACGGATTGGACATTTTTGAACATGTTGGATGACTTGAATTGCTCGGATTTTGGCCCCTATTATGGGCCAGACAAGATGCACCCGGGTGAGTTTTTGTGCCCCACTCAAGCTCCACTACTTTTTCAGGATAATGGAGATCGTGAAATTCAAGGTGGTGATGATGAAGATCATGATGCTTTTTCTAACCATTCATTTCTTTGGGGTTGGAACTTTTGA 720 0.4778 MVKPAMVGVDSSTCNDSCSTTNNTSSSKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKSASFNFPDTPHNLEINVVLPHHQSLSPQEIQEVAAKFANNDPPLGSGAREEEPSSESQSESKSNNTTETTFANIYGGTAQVDQGDCWDTTDWTFLNMLDDLNCSDFGPYYGPDKMHPGEFLCPTQAPLLFQDNGDREIQGGDDEDHDAFSNHSFLWGWNF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0502 239 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Ssu5g0502 239 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Ssu5g0502 239 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Ssu5g0502 239 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Ssu5g0502 239 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Ssu5g0502 239 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Ssu5g0502 239 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Ssu5g0502 239 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g0502 239 MobiDBLite consensus disorder prediction 117 146 - -
Ssu5g0502 239 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Ssu5g0502 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 13 239 - -
Ssu5g0502 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0502 Ssu-Chr5 10725953 10726672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0502 22 194 AP2-EREBP Transcription Factor Family AT1G74930 47.222 1.85e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g0502 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0502 - - gmx:112999363 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0502 5 10725953 10726672 Ssu5g0502 5 10725953 10726672 ECH
Ssu1g3562 1 90743438 90744232 Ssu5g0502 5 10725953 10726672 ECH