Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0492 ATGGAAATCGGACTTTGTCCTGGTTCGGCCCAATTGGAACTAAGTGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAGAGGAACGCAGCCTGAACGCCCACCACGCCCACTACGAGCCTTTGGTTCTGCTTTAAGAGTCTATGTCGGCAACTTGCCATGGGATGTTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACACAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACTATGTCCAGTGAAACTGACACAGAGactgatatttatttatttaattttttttaa 330 0.4515 MEIGLCPGSAQLELSGRVLTVNKAAPRGTQPERPPRPLRAFGSALRVYVGNLPWDVDNARLEQIFSEHGKVEDARVVYDTETGRSRGFGFVTMSSETDTETDIYLFNFF 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0492 109 Gene3D - 20 107 IPR012677 -
Ssu5g0492 109 PANTHER OS02G0815200 PROTEIN 12 100 - -
Ssu5g0492 109 SMART rrm1_1 46 109 IPR000504 GO:0003723
Ssu5g0492 109 PANTHER RIBONUCLEOPROTEIN 12 100 - -
Ssu5g0492 109 SUPERFAMILY RNA-binding domain, RBD 13 101 IPR035979 GO:0003676
Ssu5g0492 109 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 109 IPR000504 GO:0003723
Ssu5g0492 109 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0492 Ssu-Chr5 10382779 10384497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0492 47 95 C2H2 Transcription Factor Family AT2G19380 34.694 2.40e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0492 - - gmx:100811487 159.073