Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0491 ATGGGGTACCTCAATTCAGTTTTGTCCTCTTCAAGCCAGGTTCATGCTGCGGAAGATTCACCTGTCAGCGGAGGGGGCCTCAGTCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAAAATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTCGGAGTTTTTGATGGCCATGGTGGTGCGCGTGCTGCCGAGTATGTCAAGCAAAACCTATTTAGTAATTTGATCAGACATCCAAAATTCATTTCTGACACCAAATCTGCAATAGCTGATGCGTATAACCATACCGACTCTGAATTTCTGAAATCTGAAGATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGTGACCGTTTACTGGTTGCAAATGTTGGGGACTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGAGGCGAAGGATTGAAGATGCTGGTGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGGAAGCTGTTGCTTTGATTAAACCAATTGAGGATGCAGAGGAGGCAGCAAAGAGGCTGATGCAAGAAGCATATCAGAGAGGTAGTTCTGACAACATTACGTGTGTTGTTGTTCGTTTTTTGACGAACCAAGGTGCTTCTTCTCATAGTAACTCTGGCTAA 882 0.4456 MGYLNSVLSSSSQVHAAEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETKIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSEDNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVALIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFLTNQGASSHSNSG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0491 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Ssu5g0491 293 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 289 - -
Ssu5g0491 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Ssu5g0491 293 PANTHER ALPHABET, ISOFORM E-RELATED 3 289 - -
Ssu5g0491 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Ssu5g0491 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Ssu5g0491 293 CDD PP2Cc 33 280 IPR001932 -
Ssu5g0491 293 SMART PP2C_SIG_2 29 280 IPR001932 -
Ssu5g0491 293 SMART PP2C_4 24 278 IPR001932 -
Ssu5g0491 293 Gene3D - 26 286 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0491 Ssu-Chr5 10368504 10372776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0491 1 292 PP2C-type Phosphatase Gene Family AT4G31750 90.068 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0491 K17506 - gmx:547661 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0491 5 10368504 10372776 Ssu5g0491 5 10368504 10372776 ECH