Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0482 ATGGAACCAACATGCGTGGATACTTCACTCAATCTTAATGTTGATCCCTCTATGCACATGGATGAGGTTTTGGTTGAAGAGTTGCGTCGACTAAGTTGTGAGAACAAGAGGTTGACTGAGATGTTGACCCACTTGTGCGAGAACTACATGGCTCTGCAAAAGCAATTGAGCCAATTGATCAACAAAAATTCCGAGCAAGACCCAACAGAATCACGCAAGAGAAAAGCAGCTGAGAGTGACTGTTGTACCAACAAATTGGGTGTTAGAGGCAACGTTAATGCTGAGTCGAGTGATATCACGGAGGAGTCATTCAAAAAGTACAAGGATTTCAACTCCTCGCCTAAGGTTTCCAAAGTCCTTGTGAAGACTGAAGCATCTAATAATAGCTTATATGTGATGGACGGATATCAATGGAGGAAATATGGTCAGAAGGTCACTAGAGATAACCCCTCTCCTAGAGCTTACTTCAGGTGCTCCTTTGCCCCAAGCTGCCCCGTGAAAAAGAAgGTGCAAAGGAGTTTAGAAGACCCTACAATACTGGTTACAACCTATGAAGGAGAGCATAACCATGGTCATCAACGAGCTGAAATATCAGTTGTCTCAAGCCAAAGTGAATCCCCTGAAGGGTCAAGTCCTGTTTCCTCAACTACACCCATAATTCGAGGTGCTTGCCCCACCGTAACGCTTGATTTGGTCAAGTCAGGGTTTGTTGACAGTGCCCAAAAGTCCTCCATCCACCGGTTTTTGGTCCAACAAATGGCCACTTCTTTGACAAGTGATCCCAATTTCACAACAGCACTTGCCACTGCCATTTCAGGAAAAATTCTAGAGGCCAAATGGTGA 843 0.446 MEPTCVDTSLNLNVDPSMHMDEVLVEELRRLSCENKRLTEMLTHLCENYMALQKQLSQLINKNSEQDPTESRKRKAAESDCCTNKLGVRGNVNAESSDITEESFKKYKDFNSSPKVSKVLVKTEASNNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSLEDPTILVTTYEGEHNHGHQRAEISVVSSQSESPEGSSPVSSTTPIIRGACPTVTLDLVKSGFVDSAQKSSIHRFLVQQMATSLTSDPNFTTALATAISGKILEAKW 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0482 280 ProSiteProfiles WRKY domain profile. 127 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0482 280 MobiDBLite consensus disorder prediction 195 217 - -
Ssu5g0482 280 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 278 - -
Ssu5g0482 280 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0482 280 MobiDBLite consensus disorder prediction 186 217 - -
Ssu5g0482 280 Pfam WRKY DNA -binding domain 134 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0482 280 SMART WRKY_cls 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0482 280 SUPERFAMILY WRKY DNA-binding domain 130 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0482 280 Coils Coil 35 62 - -
Ssu5g0482 280 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 278 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0482 Ssu-Chr5 10132881 10134251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0482 6 277 WRKY Transcription Factor Family AT1G80840 46.154 1.25e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g0482 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0482 - - gmx:100810978 429.869