Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0481 ATGGTCGTTCAACTCTTCAACATACCAATCATAATGGATGAAAAGGTGGAAACTCTTAAAGAGGAGTTACAAAGAGTGAGAGAGGAGAATAATACTCTAAGAGTGATGCTTGATGTTCTAAGCAGCAAGTGCACAAAGCTTGAGATCCATCTTCAAGAGATAAACAAGGCACAACACAAGGGTATGAGTTCAAATCAAATAGGGTCAGTAACAGTTCCTATTCTTGATACAAACAAGAGAGCGAAACTTGAGTTTCCCACAGCCAAAAGGCCATTACAAGTATTTGTCAGAACACACCCCAAGGACGATAGTTTGATAGTAAAAGATGGCTATCAGTGGAGGAAGTATGGGCAGAAGGTCACCAAAGACAATGCTTCACCTCGAGCTTACTTCAGGTGTTCCCTGGCTCCCAATTGCCCGGCCAAAAAGAAGGTGCAAAGATGCATACATGATAAGTCTATCCTTATTGCAACTTATGATGGAGAGCACAACCATGGTGCCCTTCATGAGTCATCTTCATCCACACCTAAAGGCTCACCAGTGGCATATAAGTTGCCTCTGACAAGCATACCGAATGACAAAGAAGATATGAACATTGACTTGGCTCTTCCTGGGTGGTCTCAAACAGATAGGAGACATAATGAAGATGTCGTGCAACAGCATAAACATGGCAGCAacatcaaaattgaagaatttgTAAGTACTGTAATCAAAGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCCAGCAAAAGGAACAAGGTCTAAACCTCAATTTGGATCTTCCTGAAGAGTGA 819 0.4176 MVVQLFNIPIIMDEKVETLKEELQRVREENNTLRVMLDVLSSKCTKLEIHLQEINKAQHKGMSSNQIGSVTVPILDTNKRAKLEFPTAKRPLQVFVRTHPKDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSLAPNCPAKKKVQRCIHDKSILIATYDGEHNHGALHESSSSTPKGSPVAYKLPLTSIPNDKEDMNIDLALPGWSQTDRRHNEDVVQQHKHGSNIKIEEFVSTVIKDPDFTMSLAEAVARTITGQQKEQGLNLNLDLPEE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0481 272 SUPERFAMILY WRKY DNA-binding domain 103 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0481 272 Gene3D WRKY domain 93 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0481 272 PANTHER WRKY TRANSCRIPTION FACTOR 49 12 254 - -
Ssu5g0481 272 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0481 272 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0481 272 Coils Coil 12 43 - -
Ssu5g0481 272 SMART WRKY_cls 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0481 272 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 254 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0481 Ssu-Chr5 10076711 10078447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0481 13 250 WRKY Transcription Factor Family AT1G80840 35.145 4.17e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g0481 WRKY 6.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0481 - - ccaj:109791737 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0481 5 10076711 10078447 Ssu1g3524 1 90163732 90166541 PCT