Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0480 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGAGTTTATGTCTTTGATTACTGCTTTACTACGGATGTTATGGAAGAAGATGAATATAAAGTGTATATAGGGGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGCGGGAAGGAGATAGCCAGAGCCAGATTTCAAACATTTTGTGTGACTATGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGTTGCCCGTTACTTACCATGGAGATGATCCACCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTAGGGCCACAAAATGTTGTGTTGATGCACTGCGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAGAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTTTGCAGTTGATGTCACCATTGAATCCATTACCTTCACAATTGAGGTATCTTCAGTATATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTGATATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGGATATATGGGCAGGACCCTTTTATTCCTGCAGATCGGACCCCAAAGGTTCTCTTTTCAACTCCAAAAAAGAGCAAACTTGTCCGCTATTACAAGCAGGCTGATTGTGAACTGGTTAAGATTGACATCCATTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGGACAGTGATTTAGAGCGTGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATaagatcaaatattttgatGCTTAACCGTGATGAAATTGACATATTATGGAATGCTAAAGATTACTTCCCTAAAAATTTTAGAGTTGAGGTTCTTTTCTCAGATATGGATGCTTCATCTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGAAGGCCTACCTGTTGAAGCATTTGCTAAGGTCAAGGAAATTTTCAGCAACGTGGACTGGCTAGATTCGAAGGCAGAGGTAGCAAGTGTGCTCCAACAGATCACTGCATCAAATATCCTACTGGAAAGATTTGACATTGGCGGTTCTGCTGCAGCAAGTGGCTTGCTAAATGAAAAGGAGTCATCCGGAAAATTTAAACTTGATTCAAAGGCGCACGGTGATACAAAGAATCTTGCTTCTGCAGTTCAGGGGAAACTTTCTACGTCCTCGTTGGTATCATCTGTGGATGTTCCTATGGAAAATAAGACAGAACAATTAGAATCAAAGGCATTGTCAGAAAATAACGCTGAGACTCTTGAATGTTTAGGTCAGGGGAACCAACCTATTCCCTCATTTGGGCACTCAACAGATTCAGATTCTACTAAAAAGGAGACCGAATTGTTAGAAACAAAACAATCATTGGAAAATGATACCGAGTTTACTACATCTATGGCTCACAAGAATCAATCTATCACCTTAATTGGACCATCTATGGATGCAAATTCAATAAAAGAGGAGAGTGGATCATTAGAATCCAAGAAGAAGGATATTGAATCATTAGCATCGAAGGCACTTTTGGAAAATGATGCCATGTGTTCTACGTCTGTAGCTCAGGGGAAACAATCTGTTCTCTTAAATGAACCATCCACTGCTGCAGATTCATTGGAAAAGAAGACTGATATGTTAGGATCAAAGGAGAAAGCAATTGAATCACTAAACTTGGAGGCATTGTTGGAAAATGATAGACAATTCAAAATTGAGCCCAAGCCATTTCCAGAAATTGATACAAGAAGTCCTACTTCTGAAGTTGAAGGGAAATTTTCTATGTCCTCATCTGAATCATTTGGTAACGCTCCTATGGAAAAGAACAAAGATCCTCTAGAATTAAAGGCATCACCAGAAAATAACATCAAGACTTTTGCTTCCATGAGTCTGGGGAAACATCTTACTCCCTCGTTTGGACTCTCAACAGATTCTAGTTCTACTGAAATGCCAATTGAATCATTAGAATCAAAGGCATTGGTGGAAAATGATACCAAGTTTCCTACTTCTCTGGCTCATGGGGAGCAGTCTATGCCCTTAATTGAACCATCCAAGGATGCAAACTCAATGAAACAGAAGATGGGACCATTAGAGTCAAAGGAAAAGGATACTGAATCGTTAGAATCAAAGTCATTGTTGGAAAATGATACCAACTGTCCTCCATCAGTGGCTCAGGGAAAACAATCTACTCCCTTAATTCAACCATTGACGAATGCAAATTCAATGAAAAAGATGGGACAATTAGAACAAATGGTATCGTCAGAAAATGATATCAAGAGTGTCACATCCACAGTTCAGAGGAAACAATATAGCCCCTTACTTGAACCGCTCGTTGATGcaaactcaattaaaaagaaGATTGAACCTCAAGAATTGCAGGTTGCACTTCAGCTTCCCactcaatcaaaaataatttcaccaCGGGTGCGTCCAGCTGTTCGATCTGCTTCAGCTTCTTATTGTAACTCCTTGCAAGGTTCACCTGTAGCTATCTCAAGATATCATAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCACGCACCAATGGATATCAAAGAAGTCCCTCATGCAGCGATATCTCCTCTGCCTTCTACTTTGCCTCCTTCTGACTCCAAGGTGCCAAATTCTATTGAGCCTAGTTCTGCCGGTGTTCCTCCAGCATCATCACCACCAGTGCTTCCATCTTTACCATTAAAAACTTCAGTTGATGCTCTTACTGCCATGGAAAAGACCTCCTTTGCTCCTGCAGATGTCgctcctcttcctcctccatcaccaccacctCCTCAATGTGAGCATACTTCAAAATTGATGCAATCTAATGTGATACAGCACGCTGAAAATACAATGCACGATGAAGGTCAAAAATTATTGGTGAGTCCTTCTCCTCCTGCACCCTCTCCCCTTCCTGGAACATCACTTTCCACTGCCAAAGATTCATTTAAAGGTCCTCCTGCACCACCGCCTCCACCTACACCTCCATCTTCAACTAGACAGGCTTCATCATCTTCAatacctcctcctcctcctccactGTCTGGGTTTCCTTCTTCAGCTTCCCAccctctttcttcttcatcGAGTATAAACAAGTCTGTTGCTATGTCTGGCCCTCCTCCCCCACCTCCACCTCCTAGCCTTTCTGGTTCTACTCCGTCACCGTTAGCGCCACCACCACCCCCTCCTCCAGCATCTGCATCCCAAAATTCTTTGCCCAAGATCTCCACAAATGTTCCACCTGTATCCCCATCTCCCCTTTCTGCCAACGGATTGTCAAAATCTGTAGTTCCTGGACCACCTTCTGTTCCTGGACCACCTTCTGTTCCATTTGGTGCAAAGGGACGTGGCCTGCTGCGAGCTAATCCGAAAGGTCAGTCTCAGTCTAAAAGGAGCAATCTGAAACCTTACCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCTGAGACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAGACTTTGTTCTCTGCAGCTGCTCCAACTTCTGATGATGGAAAAGGAGGAAAATCAAATCGCCGCTCCTTGGGGCAAAAAGTTGACAAAGTTCAATTGATTGAGCTCAGGCGGGCGTATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGATTTGATGAGTGCTGTGCTTGCATTGGATGATTCAGTATTAGATGTCGATCAAGTTGAGAATCTCATAAAAttctctccaaccaaagaaGAGATGGAACTGCTCAAGGGCTATAATGGGGATAAGGACAACTTGGGAAAGTGTGAACAGTTCTTCTTAGAATTAATGAAAGTGCCAAGAGTGGAAAACAAGCTAAGAGTTTTCTCTTTCAAGATGCAATTTTGCTCCCAGGTTTCAGAGCTTAAAAGGGACTTGAATATTGTAAATTCTGCATCTGAAGATATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCCTTGAACCATGGAACTGCAAGAGGTTCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAGCTCACTGATACACGAGCCAGAAACAGCAAGATGACTCTTATGCATTATCTTTGTAAGGTGCTTGCTGAAAAACTTCCAGAACTTCTAGATTTCCCCAAAGACCTAGTGAGTTTGGAGGCTTCAACCAAGatacaattaaaatatttggcaGAGGAAATGCAAGCTATTAGTAAAGGCCTGGAGAAAGTAGTTCAGGAGTTAACTGCATCAGAGAATGATGGGCCTGTGTCAGAAAACTTCTGCCAGCTTCTGAAGGAATTTCTTTCTTATGCTGAAGCTGAAGTGAGGTCTTTGGCTCAACTCTATGCCAATGTAGGTAAAAATGCAGATTTATTGGCTTTATACTTCGGAGAAGATCCAGCACGTTGTCCATTTGAACAAGttgTATCTACTCTGCTCAACTTTGTGAGAATGTTCGTAAAAGCGCATGAAGAAAATTGCAAGCAGattgaattagaaaaaaagagagcaGAGAAGGAAGcagaaaatgaaaagttgaaGCTAGCTGCTGCTAAAAAGGAGTCTGAACAGATGATAAGGACCACCATCAAGAGTGGGAATATTAAATGA 4803 0.4025 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEDEYKVYIGGIIGQLRGHFPDASFMVFNMREGDSQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGPQNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPDMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKKSKLVRYYKQADCELVKIDIHCHVQGDVVFECIHLDSDLEREEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDYFPKNFRVEVLFSDMDASSSVISIDLPRVEEKEGLPVEAFAKVKEIFSNVDWLDSKAEVASVLQQITASNILLERFDIGGSAAASGLLNEKESSGKFKLDSKAHGDTKNLASAVQGKLSTSSLVSSVDVPMENKTEQLESKALSENNAETLECLGQGNQPIPSFGHSTDSDSTKKETELLETKQSLENDTEFTTSMAHKNQSITLIGPSMDANSIKEESGSLESKKKDIESLASKALLENDAMCSTSVAQGKQSVLLNEPSTAADSLEKKTDMLGSKEKAIESLNLEALLENDRQFKIEPKPFPEIDTRSPTSEVEGKFSMSSSESFGNAPMEKNKDPLELKASPENNIKTFASMSLGKHLTPSFGLSTDSSSTEMPIESLESKALVENDTKFPTSLAHGEQSMPLIEPSKDANSMKQKMGPLESKEKDTESLESKSLLENDTNCPPSVAQGKQSTPLIQPLTNANSMKKMGQLEQMVSSENDIKSVTSTVQRKQYSPLLEPLVDANSIKKKIEPQELQVALQLPTQSKIISPRVRPAVRSASASYCNSLQGSPVAISRYHSAPSALGITSVLQDHAPMDIKEVPHAAISPLPSTLPPSDSKVPNSIEPSSAGVPPASSPPVLPSLPLKTSVDALTAMEKTSFAPADVAPLPPPSPPPPQCEHTSKLMQSNVIQHAENTMHDEGQKLLVSPSPPAPSPLPGTSLSTAKDSFKGPPAPPPPPTPPSSTRQASSSSIPPPPPPLSGFPSSASHPLSSSSSINKSVAMSGPPPPPPPPSLSGSTPSPLAPPPPPPPASASQNSLPKISTNVPPVSPSPLSANGLSKSVVPGPPSVPGPPSVPFGAKGRGLLRANPKGQSQSKRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAAAPTSDDGKGGKSNRRSLGQKVDKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLALDDSVLDVDQVENLIKFSPTKEEMELLKGYNGDKDNLGKCEQFFLELMKVPRVENKLRVFSFKMQFCSQVSELKRDLNIVNSASEDIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNSKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSENFCQLLKEFLSYAEAEVRSLAQLYANVGKNADLLALYFGEDPARCPFEQVVSTLLNFVRMFVKAHEENCKQIELEKKRAEKEAENEKLKLAAAKKESEQMIRTTIKSGNIK 1600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 1121 1144 - -
Ssu5g0480 1600 Coils Coil 1551 1592 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 912 948 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 1035 1049 - -
Ssu5g0480 1600 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1176 1576 IPR015425 -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 744 759 - -
Ssu5g0480 1600 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1189 1570 - -
Ssu5g0480 1600 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Ssu5g0480 1600 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 623 670 - -
Ssu5g0480 1600 Gene3D Formin, FH2 domain 1195 1591 IPR042201 -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 760 790 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 636 653 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 682 702 - -
Ssu5g0480 1600 Pfam Formin Homology 2 Domain 1178 1550 IPR015425 -
Ssu5g0480 1600 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 970 984 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 682 790 - -
Ssu5g0480 1600 SMART PTEN_C2_2 197 337 IPR014020 -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 1088 1120 - -
Ssu5g0480 1600 PANTHER FORMIN-J 620 1072 - -
Ssu5g0480 1600 PANTHER FORMIN-J 1 607 - -
Ssu5g0480 1600 PANTHER FORMIN-J 1059 1593 - -
Ssu5g0480 1600 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 1002 1185 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 968 987 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 1070 1087 - -
Ssu5g0480 1600 MobiDBLite consensus disorder prediction 917 936 - -
Ssu5g0480 1600 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Ssu5g0480 1600 Gene3D - 196 341 - -
Ssu5g0480 1600 SMART it6_source 1176 1596 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0480 Ssu-Chr5 10056152 10075419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0480 789 948 FH2 protein (formin) Gene Family AT2G25050 30.857 4.79e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0480 - - gsj:114393863 2178.29