LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0474	atggCTGGTTCTTCAACAACTACCACCTCCTCAGCTTCTCTTCtgctcctcttcctcctctttggCTTCTCTTTAGCTAAGGAAATCTTGGTTGGAGGTAAGACTGATGCGTGGAAGATTCCAGCCTCTGAATCAGACTCACTCAACCAATGGGCAGGAAGGTCTCGTTTCCAAGTTGGCGACTATCTGGTTTGGAAATATGATGGTGGGAAGGATTCAGTTTTGCAAGTGAGCAGAGAGGATTATGGCAATTGCAGCATCTCAAACCCCGTAAAAGAACACAGTGATGGGACCACTAAGGTGAAGCTTGACCGTCCTGGGCCATTCTACTTCATCAGTGGGGCAAAGGGTCACTGTGAGAAGGGTCAGAAGCTAGTGGTGGTGGTTTTGACTCCAAGGGGAAGGTACACTGGTGTTTCTTCACCAGCACCTGCACCTTCTTCAGCAGGGTTTGAAGGTCCTGCTGTTGCTCCTACTAGCGGTGCCACTGCTTTGCATGGGGGCCTTGTCATGGCTCTGGGAGTGTTTGCTATGTGGGTGTTTGCTATGTGA	552	0.4746	MAGSSTTTTSSASLLLLFLLFGFSLAKEILVGGKTDAWKIPASESDSLNQWAGRSRFQVGDYLVWKYDGGKDSVLQVSREDYGNCSISNPVKEHSDGTTKVKLDRPGPFYFISGAKGHCEKGQKLVVVVLTPRGRYTGVSSPAPAPSSAGFEGPAVAPTSGATALHGGLVMALGVFAMWVFAM	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0474	183	ProSiteProfiles	Phytocyanin domain profile.	27	131	IPR003245	GO:0009055
	Ssu5g0474	183	Gene3D	-	25	133	IPR008972	-
	Ssu5g0474	183	PANTHER	BLUE COPPER PROTEIN	9	180	IPR039391	GO:0009055
	Ssu5g0474	183	Pfam	Plastocyanin-like domain	38	123	IPR003245	GO:0009055
	Ssu5g0474	183	SUPERFAMILY	Cupredoxins	26	130	IPR008972	-
	Ssu5g0474	183	CDD	OsENODL1_like	27	130	IPR041846	-
	Ssu5g0474	183	PANTHER	EARLY NODULIN-LIKE PROTEIN 3	9	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0474	Ssu-Chr5	9948372	9949838	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0474	10	181	Phytocyanin Superfamily	AT4G31840	52.809	3.08e-60	184

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0474	-		-	gmx:100527857	275.404

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g0474	5	9948372	9949838	Ssu5g0474	5	9948372	9949838	ECH
	Ssu5g0474	5	9948372	9949838	Ssu1g3531	1	90229146	90230016	PCT