Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0467 ATGGGAACAACCCTCAGCGTTCCCAAAACTGAAAAGTCTTCCGATGATGGTGAAAATGACCATCTTAGATATGGTTTATCATCTATGCAAGGCTGGCGCGCAACAATGGAAGATGCACATGCTGCACATCTTGATCTGGATGCTTCCACTTCCTTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTATCTTCATCAGCAGGTGCTCAAGAATGAAGCATATATAGCTGGAGATATAGGAACCTCTCTTCAGGAATCATTTTTCAGAATGGACGAGATGATGCGTGGTCAAAGGGGATGGAGGGAGTTAGCAGTTTTGggtgataagataaaaaagtttaatggtaAGATGGAAGGGTTGATTTGGTCTCCACGAAGCAGAGATGGTAAGGACCAAGATGATGGTTGGGCCTTTGAAGAGGGTCCTCATTCTAGTTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAATTATTAGAAACAATCAACTTTTTGTAGCAAATGCCGGTGATTCACGTTGTGTAATATGTAGGAAGGGTCAGGCATACGATTTGTCTACAGATCATAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAGGCTGGTGGTTTTGTTCAAGCAGGACGAGTTAATGGGAGTTTAAGTCTTGCAAGAGCTATAGGTGACATGGAATTTAAGCAGAATAGATTCCTTTCTGCTGAAAAACAAATGGTGACAGCCAATCCAGACATAAATACTGTTGAACTTTGTGATGAAGATGAATTTATAGTGCTAGCTTGTGATGGCATATGGGATTGCTTGTCAAGCCAACAATTGGTAGATTTTGTCGGTCAACAACTGCTCTTgGAAACTAAACTTTCTGCGGTTTGTGAAAGAGTACTAGATCGATGTTTGGCACCAACAGTTACTGTTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTCAAAAAACAGGTCCAGTCCAGTGCACCAGCATAA 1020 0.4088 MGTTLSVPKTEKSSDDGENDHLRYGLSSMQGWRATMEDAHAAHLDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVLKNEAYIAGDIGTSLQESFFRMDEMMRGQRGWRELAVLGDKIKKFNGKMEGLIWSPRSRDGKDQDDGWAFEEGPHSSFAGPTSGSTACVAIIRNNQLFVANAGDSRCVICRKGQAYDLSTDHKPDLEIEKERILKAGGFVQAGRVNGSLSLARAIGDMEFKQNRFLSAEKQMVTANPDINTVELCDEDEFIVLACDGIWDCLSSQQLVDFVGQQLLLETKLSAVCERVLDRCLAPTVTVGEGCDNMTMILVQFKKQVQSSAPA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0467 339 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Ssu5g0467 339 Pfam Protein phosphatase 2C 156 313 IPR001932 -
Ssu5g0467 339 MobiDBLite consensus disorder prediction 132 158 - -
Ssu5g0467 339 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g0467 339 CDD PP2Cc 23 329 IPR001932 -
Ssu5g0467 339 MobiDBLite consensus disorder prediction 132 146 - -
Ssu5g0467 339 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 335 - -
Ssu5g0467 339 SMART PP2C_SIG_2 28 329 IPR001932 -
Ssu5g0467 339 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Ssu5g0467 339 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Ssu5g0467 339 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Ssu5g0467 339 PANTHER PROTEIN PHOSPHATASE 2C 1 335 IPR015655 GO:0004722|GO:0006470
Ssu5g0467 339 SMART PP2C_4 13 327 IPR001932 -
Ssu5g0467 339 Gene3D - 1 330 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0467 Ssu-Chr5 9869798 9876194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0467 1 331 PP2C-type Phosphatase Gene Family AT2G25070 76.435 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0467 K17499 - gmx:100793667 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0467 5 9869798 9876194 Ssu5g0467 5 9869798 9876194 ECH
Ssu5g0467 5 9869798 9876194 Ssu1g3536 1 90262582 90268084 PCT