Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0461 ATGACAGACAGAAATCCAAGGCCGCCACCACCAGATACACCTGACAGTGATGAATTCACCAACCAGTTGCCTTTTGAGCTCTCTGATTTGAACTTCGATGATAATCAATGGCTGAATGAGTCATTTGCTTCTGAGAATGTCTCGAACCAGGTTCATCAGGCCAGTAATGTAGGTCACTTTGGAGGAGGTGGCAGCCACTTTGAAGTGTCTTCTAGCAGAGATACTAGCAGTGGATTCGAGACGAGGGAAGTTGTTAGAGAGAGAGTTGCATTCAAAACAAAGTCAGAGATTGAAATACTAGACGATGGGTACAAATGGAGGAAGTACGGAAAGAAAATGGTGAAGAACAGCCCCAATCCAAGGAATTACTATAGGTGTTCAGTGGATGGATGCCCTGTGAAGAAGAGAGTGGAGAGAGATAAGGAAGACCCTAAGTATGTAATAACAACCTACGAAGGCAACCACACTCATCCAAGTTATTCCTAG 486 0.4424 MTDRNPRPPPPDTPDSDEFTNQLPFELSDLNFDDNQWLNESFASENVSNQVHQASNVGHFGGGGSHFEVSSSRDTSSGFETREVVRERVAFKTKSEIEILDDGYKWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDKEDPKYVITTYEGNHTHPSYS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0461 161 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 159 - -
Ssu5g0461 161 MobiDBLite consensus disorder prediction 54 80 - -
Ssu5g0461 161 SMART WRKY_cls 100 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0461 161 ProSiteProfiles WRKY domain profile. 95 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0461 161 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g0461 161 SUPERFAMILY WRKY DNA-binding domain 93 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0461 161 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g0461 161 Gene3D WRKY domain 87 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0461 161 Pfam WRKY DNA -binding domain 101 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0461 161 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 159 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0461 Ssu-Chr5 9483285 9484316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0461 88 159 WRKY Transcription Factor Family AT5G26170 81.944 4.27e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g0461 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0461 - - gmx:100796836 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0461 5 9483285 9484316 Ssu5g0461 5 9483285 9484316 ECH