Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0448 ATGAGTTCTAATCCAACCGATGAAGATTCAGGTTCAGAGTCCCAAACCCAATTACACGCGCCAAAAGAGATCGAGTGGCACATGCTGGACAAGTCGAAGTTCTTATTCCTAGGAGCAGCCTTGTTCTCGGCCCTATCCGCCGCCCTCTACCCCGTTGTCGTGTTAAAGACACGTCAGCAGGTTTCCTCCGCCAAAATCTCTTGCCGCAACATGTCTCGCTCCATCGTGCGCTACGAGGGTTTCCGAGGTTTCTACCGAGGCTTCGGCACTTCGCTAATGGGAACAATCCCCGCACGTGCGCTTTACATGTCAGCCCTCGAAGTCACCAAGAGCAACGTCGGCACCGCCACCGTTCGCTTGGGGTTCTCCGACACCGCAGCCGCTGCCATAGCTAATGCCGCAGGAGGAGTAGCTTCCGCTCTGGCCGCACAATTAGTGTGGACCCCAGTTGATGTCGTGAGCCAAAGACTCATGGTTCAAGAAAGCaacaaaaTGTGTTACAGGAACGGTTTTGATGCGTTTAGGAAGATTCTGGGTGTTGATGGGCCGAGGGGGTTCTACAGGGGGTTTGGGGTTTCGATTGTGACTTACGCGCCGTCTAATGCGGTTTGGTGGGCTTCGTACTCTATGATGCATAGGCTTATTTGGGGCGCGTTTGGCGGTTGTGGTTTTAATTCTGGGCGTGATTCGAAGGTGATGGTGGGTGTGCAAGGGTTGAGTGCGGTTCTGGCTAGTGGGGTTTCGGCGATTGTGACTATGCCACTTGACACGATCAAAACGAGGCTGCAAGTGTTGGATGCCGAAGAGAATGGGCGAAGGAGGCCACTGACTCTCGTGCAGGCAGTGCGGAATTTGGTGAAAGAAGAGGGCATTTTGGCTTGTTACAGAGGGTTGGGACCAAGGTGGGCGTCAATGTCCATGTCTGCAGCAACCATGATTACTACCTACGAGTTTTTGAAACGCGTGTCTGCGAAGAATATAGATAGATTGACTGTGTAG 999 0.5265 MSSNPTDEDSGSESQTQLHAPKEIEWHMLDKSKFLFLGAALFSALSAALYPVVVLKTRQQVSSAKISCRNMSRSIVRYEGFRGFYRGFGTSLMGTIPARALYMSALEVTKSNVGTATVRLGFSDTAAAAIANAAGGVASALAAQLVWTPVDVVSQRLMVQESNKMCYRNGFDAFRKILGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSMMHRLIWGAFGGCGFNSGRDSKVMVGVQGLSAVLASGVSAIVTMPLDTIKTRLQVLDAEENGRRRPLTLVQAVRNLVKEEGILACYRGLGPRWASMSMSAATMITTYEFLKRVSAKNIDRLTV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0448 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 322 IPR018108 -
Ssu5g0448 332 PRINTS Mitochondrial carrier protein signature 85 103 IPR002067 GO:0055085
Ssu5g0448 332 PRINTS Mitochondrial carrier protein signature 136 158 IPR002067 GO:0055085
Ssu5g0448 332 Pfam Mitochondrial carrier protein 236 325 IPR018108 -
Ssu5g0448 332 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Ssu5g0448 332 Pfam Mitochondrial carrier protein 45 112 IPR018108 -
Ssu5g0448 332 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 328 - -
Ssu5g0448 332 Gene3D Mitochondrial carrier domain 222 331 IPR023395 -
Ssu5g0448 332 Gene3D Mitochondrial carrier domain 12 217 IPR023395 -
Ssu5g0448 332 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 9 328 - -
Ssu5g0448 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 32 112 IPR018108 -
Ssu5g0448 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Ssu5g0448 332 SUPERFAMILY Mitochondrial carrier 28 319 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0448 Ssu-Chr5 9344208 9345903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0448 17 326 Chloroplast and Mitochondria Gene Families AT5G26200 66.044 4.23e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0448 K15121 - gmx:100797365 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0448 5 9344208 9345903 Ssu5g0448 5 9344208 9345903 ECH
Ssu1g3603 1 91451045 91452109 Ssu5g0448 5 9344208 9345903 ECH