Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0447 ATGATAGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCCCCAGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAGCGactatttaatatgataaatgatcTTCCGACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCCTACCAGTAACAAATCGAAATCAAACTCTAAGCGAGGTTCTGAATCAAAGTATTCAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGTGGGTTTGAGTTTGGGTTTGGAAGAGGAAGATGAAGAGGAACATGGGGAGACTTTGTGTGGGGCATGTGGAGAGAGCTATGCTGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 651 0.4347 MIEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNPTSNKSKSNSKRGSESKYSKAMQSKDEDDEGVGLSLGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0447 216 MobiDBLite consensus disorder prediction 122 144 - -
Ssu5g0447 216 Pfam Alfin 3 98 IPR021998 GO:0006355|GO:0042393
Ssu5g0447 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 211 IPR013083 -
Ssu5g0447 216 ProSiteProfiles Zinc finger PHD-type profile. 160 212 IPR019787 -
Ssu5g0447 216 MobiDBLite consensus disorder prediction 104 155 - -
Ssu5g0447 216 SUPERFAMILY FYVE/PHD zinc finger 152 213 IPR011011 -
Ssu5g0447 216 SMART PHD_3 162 210 IPR001965 -
Ssu5g0447 216 ProSitePatterns Zinc finger PHD-type signature. 163 209 IPR019786 -
Ssu5g0447 216 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 216 - -
Ssu5g0447 216 CDD PHD_AL_plant 162 212 IPR044104 -
Ssu5g0447 216 MobiDBLite consensus disorder prediction 104 121 - -
Ssu5g0447 216 PANTHER CPG BINDING PROTEIN 3 216 IPR045104 GO:0006355|GO:0042393
Ssu5g0447 216 Pfam PHD-finger 163 212 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0447 Ssu-Chr5 9324105 9332051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0447 3 215 Alfin-like Transcription Factor Family AT3G42790 76.168 1.01e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu5g0447 Alfin 3.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0447 - - gmx:100170697 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0447 5 9324105 9332051 Ssu5g0447 5 9324105 9332051 ECH