Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0446 ATGGACGCAGGCGCTACGTACAATCCCCGTACGGTCGAAGAGGTCTTTAGGGATTTCAAAGGTCGCAGAGCTGCGTTGATCAAAGCCCTCACCACCGATGTCGAAGAGTTCTATCAGCAGTGCGATCCCGGATGCACAATCAGGCAAAAACTCAAGGAAAAAATACAAGTTGGTCTAAAATCTGGCTTGTGTATGAGAGGAAGGggaaggaaggaaaagaaaaaacggGAGTTCTGA 237 0.4388 MDAGATYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPGCTIRQKLKEKIQVGLKSGLCMRGRGRKEKKKREF 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0446 78 Pfam Alfin 11 44 IPR021998 GO:0006355|GO:0042393
Ssu5g0446 78 PANTHER CPG BINDING PROTEIN 4 44 IPR045104 GO:0006355|GO:0042393
Ssu5g0446 78 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3 4 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0446 Ssu-Chr5 9320508 9321828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0446 1 43 Alfin-like Transcription Factor Family AT5G26210 79.070 6.30e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0446 - - pop:7476667 86.2705