Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0444 atgagCTTCAAGAACAGCCCTCAAACTCAGCACAAGGGACCCTCTCCATACCTGTCTCGCCAATCATCCAATTCCAGTTTTAGGGCCAAGACACAGAAGAATGTGGAGCCACCAAGCCCTCTATCGGTTGGATGCTGCCGAGCCTTCAGCAATGTCAAGACTACGGGGTCCTCTGCCTCCACGTCACAACAAAATCCGCACCAGCTACAATACCAAAGGCTGGAAGTAAAGGTGGCAGATTTGGAAAAGGAAGTGCAAAAACAAACAGAACTACGAGTGATGTACCGGAAAAGAATGGAAAGGACCCAAGATTACTTGAGGTACTGCCTTCAAATTGCACAGGAAAATGGAATATTAGATCTCATTGTCCATTCCAAAGGTGAACTTCAACATTCTCCACTCTCTGTCCACACCGTCAGCTCCATTGCCAGCCCtccaattcaaattcaaattcccACTCCACCACCACACCAACAACACCCCATTCTAGGGTCCATCATTGATCAAGCTAAAATCAATGGATGGTATATTGATCCAAATGAGATTCAATTGGACGAGAAAATTGGGCAGGGAAGCACAGCAGAGATTCATAAAGGAACATGGCGTGGATTTGAGGTAGCAGTGAAGTGCATATCGGAAGACTTCTTCCGCACAAACGTAAACGGCGTCTCTTACTTCTCCCAGGAGCTCGAAACGCTGTCGCGGCAGCGCCACAGGTTCGTGCTTCAGCTGATGGGCGCGTGCCTCGACCCTCCCCGCCGCGCGTGGGTGGTCACGGAGTACCTGAGCACCACGCTGAGGGAGTGGCTGCACGGGCCTGGGAACAGGCGCAGAGAGCGAACGGTGCCACTTCCACCCTTCAAAGACAGAGTGGTTCGGGCCTTGGAAATAGCCCAAGCCATGCAGTATCTGCACGAGCAAAAGCCCAAACTCATTCACCGCGACTTGAAGCCCAGCAACATTTTCCTCGACGATGCCTTGCACGTTAGAGTCGCTGATTTTGGTCACGCGCGCTTCTTGGGTGACGAGGAAATGGCCCTCACCGGTGAAACGGGAACATACGTGTACATGGCACCAGAGGTGATTCGATGTGAACCTTATAACGAAAAGTGTGATGTGTACAGTTTTGGGGTCATATTGAACGAGCTACTAACTGGAAATTACCCCTATGTTGAGACGGAATATGGTCCTACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTACGACCTAAGCTTCCGTGTGATGATGTTGGCCAACTGGGAGAGCTTATTGACCTTATCTGCCTTTGCTGGGATAGAAATCCATCTACTCGACCATCCTTCGCTACAATTACCCTTTGCCTCAAAAGTTATGCCAAGAAGAATCTCCTTTAA 1377 0.4909 MSFKNSPQTQHKGPSPYLSRQSSNSSFRAKTQKNVEPPSPLSVGCCRAFSNVKTTGSSASTSQQNPHQLQYQRLEVKVADLEKEVQKQTELRVMYRKRMERTQDYLRYCLQIAQENGILDLIVHSKGELQHSPLSVHTVSSIASPPIQIQIPTPPPHQQHPILGSIIDQAKINGWYIDPNEIQLDEKIGQGSTAEIHKGTWRGFEVAVKCISEDFFRTNVNGVSYFSQELETLSRQRHRFVLQLMGACLDPPRRAWVVTEYLSTTLREWLHGPGNRRRERTVPLPPFKDRVVRALEIAQAMQYLHEQKPKLIHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGVILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDVGQLGELIDLICLCWDRNPSTRPSFATITLCLKSYAKKNLL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0444 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 31 455 - -
Ssu5g0444 458 ProSitePatterns Protein kinases ATP-binding region signature. 188 209 IPR017441 GO:0005524
Ssu5g0444 458 CDD STKc_MAP3K-like 188 446 - -
Ssu5g0444 458 Pfam Protein kinase domain 184 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0444 458 MobiDBLite consensus disorder prediction 1 40 - -
Ssu5g0444 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Ssu5g0444 458 PANTHER OS09G0443600 PROTEIN 31 455 - -
Ssu5g0444 458 Gene3D Phosphorylase Kinase; domain 1 166 263 - -
Ssu5g0444 458 MobiDBLite consensus disorder prediction 1 38 - -
Ssu5g0444 458 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0444 458 Coils Coil 71 98 - -
Ssu5g0444 458 ProSiteProfiles Protein kinase domain profile. 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0444 458 PIRSF TyrPK_CSF1-R 276 457 - -
Ssu5g0444 458 PIRSF TyrPK_CSF1-R 25 116 - -
Ssu5g0444 458 SUPERFAMILY Protein kinase-like (PK-like) 154 445 IPR011009 -
Ssu5g0444 458 Gene3D Transferase(Phosphotransferase) domain 1 284 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0444 Ssu-Chr5 9222340 9232046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0444 175 455 MAP Kinase Kinase Kinase AT2G17700 36.879 4.34e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Ssu5g0444 Pkinase 8.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0444 - - gmx:102666416 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0444 5 9222340 9232046 Ssu5g0444 5 9222340 9232046 ECH