Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0434 ATGACATTTCGATTTGGGGTCCTTTTTTTGGCTTTGCTAATTTGTTTGAATGTCAATTATGTGGAATCAGGTGATGGTGCCACATTGTTAGAGATAAAGAAGTCATTCAGGGACGTGGATAACGTTCTCTATGATTGGACTGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATCACATGTGATAATGTCACCTTTAATGTTGTTGCACTCAATCTATCAGGCTTGAGTCTTGATGGCGAAATTTCATCTGCAATAGGGAACCTTCAGAGTTTGGTCTCAATTGACctaagagaaaacaggttatCAGGGCAGATACCTGATGAGATTGGTGACTGTTCTTCTTTAAAGAACTTGGACTTGtcttttaatgaaattagaGGGGATATACCATTTTCAATTTCTAAGTTGAAACAACTGGAAAATCTgattttaaaaaacaacCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTgGACCTGGCTCAAAATAATCTCAGTGGTGAAATACCAAGGCTTATATATTGGAATGAAGTTTTGCAGTATTTGGGCTTGAGAGGGAACAATTTGGTGGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAACTGTACTGCCTTCCAGGTCTTGGACTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACTTTGTCATTACAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTGGCTGTCCTAGACTTGAGTTGTAACATGTTAAGCGGACCAGTCCCTCCTATCTTGGGAAATTTGACTTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGCTTCGTCCCTCCAGAGCTTGGAAATATGACAAAGCTTCACTATTTGGAACTGAATGATAACCATTTAAGTGGACATATCCCCCCTGAGCTTGGAAAGCTTACTGATCTGTTCGACTTAAATGTTGCTAGCAACAATCTCGAGGGGCCAATTCCTAGTAATATCAGCTCATGTAAAAATCTCAACAGCCTCAATGTGCATGGGAACAGGTTGAATGGAACAATTCCCCCTGCTTTGCAGAGCTTGGAGAGCATGACCTCTCTGAATCTTTCTTCCAACAATCTTCAGGGTGCAATTCCAATTGAGCTGTCACAGATTGGTAATTTGGATACATTGgatatttcaaacaataatttagtTGGTTCCATCCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAACAATTTGACAGGAGTTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTTATGGAAATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATGATATCCTTGAGACTTGAGAACAACAAATTAACCGGTGATGTGGCATCACTTTCAAATTGCCTTAGTCTCTCTCTGCTTAATGTGTCCTATAACAAACTGGTTGGTGTTATTCCCACAAGTAACAACTTTTCCAGGTTCTCCCCTGACAGTTTCATTGGAAACCCTGGTCTCTGTGGTAATTGGTTGAATTTGCCGTGTCATGGTGCTCGCCCTACAGAGCGAGTTACATTATCTAAGGCGGCTATTCTGGGAATTACTCTTGGTGCCCTTGTAATTCTTCTTATGATATTGCTGGCGGCTTGCCGACCGCACAATCCTTCTTTTCCTGATGGATCACTTGACAAACCAGTTAATTACTCCCCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCATCAAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCCATCAAGAGGATCTATTCTCACTATCCCCAATGCATTAAAGAATTTGAAACTGAACTCGAGACGGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTTCTCTCTGTCCCCATATGGCCACCTCCTATTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTACCAAGAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAATAGCACTCGGAGCAGCACAAGGGCTTGCTTATCTACACCACGATTGCAGTCCTCGAATCATCCACAGGGATGTGAAATCATCTAACATTTTATTAGACGCAGACTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGTCTCTGCCCCTCTAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCCGAGTATGCTAGAACTTCGCGACTCACTGAGAAGTCTGATGTGTACAGTTACGGTATCGTTTTGCTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACTATCTGATTTTGTCAAAGGCAGCAACCAATGCTGTGATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAGGACTTGGGAGCTGTAAAAAAGGTTTATCAGCTTGCTCTATTATGCACAAAGAGACAGCCAGCTGATAGGCCCACAATGCATGAAGTGACACGTGTGCTCGGAAGTCTTGTGCCATCAAGCACCCCACCAAAACAACCAGCTGCACTTCCACCTGCTTCAAATCCATCTGCCATTGCCAAAGTGCCATGCTACATGGATGAGTATGCAAACCTCAAGACTCCACACTTGGTGAACTGCCCCTCCATGAGCACCTCAGATGCCCAACTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAGAacagtgagtga 2946 0.4141 MTFRFGVLFLALLICLNVNYVESGDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGITCDNVTFNVVALNLSGLSLDGEISSAIGNLQSLVSIDLRENRLSGQIPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPVPPILGNLTYTEKLYLHGNKLTGFVPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVASNNLEGPIPSNISSCKNLNSLNVHGNRLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSQIGNLDTLDISNNNLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNQLSGLIPEELSQLQNMISLRLENNKLTGDVASLSNCLSLSLLNVSYNKLVGVIPTSNNFSRFSPDSFIGNPGLCGNWLNLPCHGARPTERVTLSKAAILGITLGALVILLMILLAACRPHNPSFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELETVGSIKHRNLVSLQGFSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHYLILSKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSSTPPKQPAALPPASNPSAIAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0434 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 968 - -
Ssu5g0434 981 ProSiteProfiles Protein kinase domain profile. 646 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0434 981 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Ssu5g0434 981 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Ssu5g0434 981 Gene3D Transferase(Phosphotransferase) domain 1 722 923 - -
Ssu5g0434 981 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Ssu5g0434 981 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Ssu5g0434 981 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Ssu5g0434 981 SUPERFAMILY Protein kinase-like (PK-like) 623 912 IPR011009 -
Ssu5g0434 981 Gene3D Phosphorylase Kinase; domain 1 619 721 - -
Ssu5g0434 981 SUPERFAMILY L domain-like 259 546 - -
Ssu5g0434 981 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Ssu5g0434 981 SMART serkin_6 646 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0434 981 Gene3D Ribonuclease Inhibitor 186 258 IPR032675 -
Ssu5g0434 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 968 - -
Ssu5g0434 981 SMART LRR_typ_2 401 425 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 449 472 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 210 234 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 497 524 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 162 186 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 473 496 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 90 114 IPR003591 -
Ssu5g0434 981 SMART LRR_typ_2 329 353 IPR003591 -
Ssu5g0434 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Ssu5g0434 981 Gene3D Ribonuclease Inhibitor 346 441 IPR032675 -
Ssu5g0434 981 Gene3D Ribonuclease Inhibitor 442 568 IPR032675 -
Ssu5g0434 981 Gene3D Ribonuclease Inhibitor 259 345 IPR032675 -
Ssu5g0434 981 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Ssu5g0434 981 Pfam Protein kinase domain 649 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0434 981 SUPERFAMILY L domain-like 48 300 - -
Ssu5g0434 981 CDD STKc_IRAK 652 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0434 Ssu-Chr5 8968379 8976356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0434 92 980 Receptor kinase-like Gene Family AT5G07180 64.983 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Ssu5g0434 Pkinase 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0434 K20718 - gmx:100782307 1831.61