Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0432 ATGTTTTTGCTGTTGCTGATGCATCTTATAGGTAAAAGTCAATCTATCTTGGTCAGCGGTGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATTATGCAGTATCTTACCTTTGTTGGTGGACGTGCTGCTGGTGATGATAGAACAGTTGAACAGCAAGTTCTTGAATCCAATCCACTTTTAGAGGCATTTGGTAATGCAAGGACTGTTAGGAATGACAATTCAAGTCGATTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGCAGAATATCTGGTGCTGCAATTAGAACTTACTTATTGGAAAGATCACGAGTAGTGCAGATAACGGATCCAGAGAGAAATTATCACTGCTTTTATCAAATGTGTGCATTTGAAAGGGATGCAGAGAAGTATAAGTTAGGACATCCAAGTCACTTCCACTATTTAAATCAAAGTAAAATCTATGAATTAGATGGTGTAAGCAATGCTGAAGAATATCTGAAGACAAGGAGGGCAATGGATGTTGTTGGTATCAATCACGAGGATCAGGAAGCCATATTTCGTGTCTTAGCTGCAATTTTACATTTGGGAAATATTGAATTTTCTCCTGGAAAAGAGCATGACTCATCGGTAGTAAAGGATGAAAAATCAAGATTTCATATGCAGATGGCTGCTGATCTTTTCATGTGTGATGTAGACCTACTGCTAGCAACATTGTGTACTCGTTCAATACAAACTCGTGAAGGAAGTATTGTCAAGGCCCTTGACTGCAATGCTGCTGTTGCTGGCCGTGATGCTTTGGCAAAAACTGTTTATGCCCGTTTATTTGATTGGCTTGTTGATAAGATCAATAGGTCTGTTGGGCAAGACATCAATTCCAAGATACAGATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAATTTTGCAAACGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTCAAGATGGAGCAGGAGGAGTATGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGATAACCAAGATGTTTTAGATTTAATTGAAaggAAACCCATTGGTATCATTGCTCTGTTGGATGAAGCTTGTATGTTTCCAAAATCGACACATGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCGCTCTCACCCTAGgttggaaaaggaaaagttttcACAAACAGATTTTACCATTTCTCATTATGCTGGAAAGGTCACTTATCATACAGATACCTTTTTAGACAAAAATCGTGATTATGTTGTAGTAGAACATTGTAATCTATTATCTTCTTCAAAATGCCCTTTCGTTTCTGGTCTTTTTCCTTTGCTACCAGAGGAATCTTCAAGATCGTCATACAAGTTTTCTTCGGTAGCTGCCAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTAAACTCAACAGAGCCTCATTACATACGATGTGTGAAACCAAATTCTTTGAATCAAccacaaatatttgaaaatgcaAGTGTCATACACCAGTTACGCTGTGGGGGTGTCCTTGAAGCTGTTCGGATAAGTCTGGCAGGTTATCCCACTCGAAGAACTTACTCAGAGTTTGTAGATCGCTTTGGGTTAATAGCCCCTGAATTTATGGATGGAAGTTATGATGATAAAGCTGCAACTGAGAAAATTTTGCAAAAGCTCAAGCTTGAGAATTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGCCAAATTGGTATTTTAGACTCGAGACGTGCTGAAGTTTTAGACAATGCTGCAAAGTGTATTCAGTGCCGACTGAGGACATTTATTGCACATAGGGATTTCATCTCAGCCAGAGCTGCTGCATTTTCTCTTCAGGCATGCTGCAGggGATACATTGCCCGAAAGATATATGCTGCTAAAAGGGAGACAGCAGCGGCTATCTCCATTCAGAAATATATTCGTATGTGGCTTATGAGGCATGCTTACTTGAAACTATATTTTTCTGCTATTATCATACAATCCCATGGTCGAGGTTTTGTGACTCGCCAAAGATTCTTACATGGAAAAGAACATAGAGCTGCTACTTTTATTCAGGCCTGTTGGAGGACGTCCAAGGTTAGGTCATCTTTCCGGCGACATCAAGCTTCAATTGTGGAAATACAATGCCTTTGGCGGTGTAGACAAGCAAAAAGAGAGCTACGTAGACTTAAACAAGAGGCAAATGAAGCTGGAGCCCTCCGTTTAGCTAAGAATAAACTGGAGAAGCAATTGGAAGAGCTCACATGGCGTTTGCaccttgaaaagaaaataaggGTTTCTAATGAAGACGCTAAGAAAATAGAGATTTCCAAACTTCAAAAGATGATAGAAGCTTTGAATCTTGAATTAGATGCAGCTAAATTGGCAACAATTAATGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTGGAATTGTCAGTAAAGGAAAAGTCCGCTTTAAAAAGAGAGCTAATTGCAGTGGATGAATTACGAAAGGAAAATGCTCTATTAAAGGTTTCATTGGATGCATTTGAAAAGAGGTGCGCAACCTTAGAGATTGAGCTTATGAATGCTCAAAAAGGCCGGGATGAAACCATTGAGAAACTGAGGGAGTTTGAACAGAAGTGTTCTCAACTTGAGCAAAATGTGAAAAGGCTTGAGGAAAAGCTATTGAGTTTAGAGGATGAAAATCATGTGCTTCGTCAGAAAGCCTTAAGTACCCCTCTTAAGAGTAACCGTCCAGGTTTTGCCAAGTCATTATCAGAAAAATACTCAAGTGCAATCGCTTTCCGCACTGAACGAAAGACCATATTTGAGTCACCCACACCCACAAAACTTATTGCCCCTTTTACACTAGGCTTGTCTGACTCCCGTCGATCTAAGTTAACAGCAGAGAGGCACCAGGATAACTATGAATTCCTCTCTAggtgtataaaagaaaatttaggaTTCAAAAATGGTAAACCTATTGCAGCTCGTATCATATACAAATGTCTTCTTCATTGGCATGCATTTGAATCTGAGCGCACAACCATTTTTGATTCCATAATCGAAGGCATAAATGAGGTTCTAAAGGTTAGGGAGGATGACATCATCCTGCCGTATTGGCTATCCAATACCTCTGCTCTTCTATGCCTTTTACAGAGGAACTTACGTTCAAATGGCTTTTTAACTACCACTGTTCAACGTTATCCTGGATCATCTGGTGTGACCAGCCGAACTGGGCATGGACCAAAATCTCCATTAAAGTTTATTGGATATGATGATGGTATATTGCAAGTGGAGGCGAGATATCCTGCTATACTTTTTAAGCAACAACTAACTGCTTGTGTAGAGAAGATTTTTGGTCTTCTACGTGACAATTTGAAAAAGGAACTTTCTCCTCTTCTGGGATCATGTATTCAGGCACCCAAAGTGGGACGAGGAGTGCATGGTGGAAAATCACCTAGATCTCCTGGTGTGCTTCCCCAACAATCACCTGGTGGTCAGTGGGGCAACATTGTCAAATTTTTGGAATTACTCATGAGCAAACTAAGTGGGAATCATGTGCCATCCTTCTTCATTCGTAAGCTGGTTACCCAGGTGTTTTCCTTCATCAATATTACACTCTTCAACAGTCTTCTTCTGCGCCGTGAATGTTGCACTTTCTCAAATGGTGAATATGTGAAGTCTGGTCTAGCAGAACTGGAGAAATGGATAGTCAATGCAAAGGAGGAGTATGCAGGGACATCCTGGCATGAGCTGAATTATATAAGACAAGCTGTTGGGTTCTTGGTAATACATCAGAAGAGGAAGAAATCTTTGGAAGAGATTCGGCAAGATCTTTGTCCGGCATTGACTGTGAGGCAAATCTATCGAATCAGCACAATGTACTGGGATGACAAGTATGGAACCCAAAGTGTATCCAATGAGGTAGTTAGTGAAATGAGAGAAATTGTCAGCAAGGATAATCAGAATCTTACCTCAAATTCTTTCTTATTGGATGATGATCTGAGCATTCCTTTCTCTGCTGAAGACATAGATATGGCAATTCCTGCCATAGATCCTGATGAGATTGATCTTCCAGAATTTGTGTCCGAATATTCTTGCGCTCAATTTCTTGGTTCACATCAGAAGTAA 4155 0.3901 MFLLLLMHLIGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQMCAFERDAEKYKLGHPSHFHYLNQSKIYELDGVSNAEEYLKTRRAMDVVGINHEDQEAIFRVLAAILHLGNIEFSPGKEHDSSVVKDEKSRFHMQMAADLFMCDVDLLLATLCTRSIQTREGSIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINRSVGQDINSKIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGKEEINWSYIEFVDNQDVLDLIERKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLEKEKFSQTDFTISHYAGKVTYHTDTFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLLPEESSRSSYKFSSVAARFKQQLQALMETLNSTEPHYIRCVKPNSLNQPQIFENASVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIAPEFMDGSYDDKAATEKILQKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDNAAKCIQCRLRTFIAHRDFISARAAAFSLQACCRGYIARKIYAAKRETAAAISIQKYIRMWLMRHAYLKLYFSAIIIQSHGRGFVTRQRFLHGKEHRAATFIQACWRTSKVRSSFRRHQASIVEIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQLEELTWRLHLEKKIRVSNEDAKKIEISKLQKMIEALNLELDAAKLATINECNKNAVLQNQLELSVKEKSALKRELIAVDELRKENALLKVSLDAFEKRCATLEIELMNAQKGRDETIEKLREFEQKCSQLEQNVKRLEEKLLSLEDENHVLRQKALSTPLKSNRPGFAKSLSEKYSSAIAFRTERKTIFESPTPTKLIAPFTLGLSDSRRSKLTAERHQDNYEFLSRCIKENLGFKNGKPIAARIIYKCLLHWHAFESERTTIFDSIIEGINEVLKVREDDIILPYWLSNTSALLCLLQRNLRSNGFLTTTVQRYPGSSGVTSRTGHGPKSPLKFIGYDDGILQVEARYPAILFKQQLTACVEKIFGLLRDNLKKELSPLLGSCIQAPKVGRGVHGGKSPRSPGVLPQQSPGGQWGNIVKFLELLMSKLSGNHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNAKEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVSEMREIVSKDNQNLTSNSFLLDDDLSIPFSAEDIDMAIPAIDPDEIDLPEFVSEYSCAQFLGSHQK 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0432 1384 ProSiteProfiles Dilute domain profile. 1026 1327 IPR002710 -
Ssu5g0432 1384 ProSiteProfiles IQ motif profile. 718 747 IPR000048 GO:0005515
Ssu5g0432 1384 ProSiteProfiles IQ motif profile. 647 671 IPR000048 GO:0005515
Ssu5g0432 1384 Gene3D - 116 173 - -
Ssu5g0432 1384 Pfam DIL domain 1203 1306 IPR002710 -
Ssu5g0432 1384 Pfam IQ calmodulin-binding motif 673 690 IPR000048 GO:0005515
Ssu5g0432 1384 Pfam IQ calmodulin-binding motif 648 667 IPR000048 GO:0005515
Ssu5g0432 1384 Pfam IQ calmodulin-binding motif 696 716 IPR000048 GO:0005515
Ssu5g0432 1384 Pfam IQ calmodulin-binding motif 623 642 IPR000048 GO:0005515
Ssu5g0432 1384 ProSiteProfiles IQ motif profile. 622 651 IPR000048 GO:0005515
Ssu5g0432 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 645 IPR027417 -
Ssu5g0432 1384 Coils Coil 815 835 - -
Ssu5g0432 1384 Gene3D Myosin VI head, motor domain, U50 subdomain 175 465 - -
Ssu5g0432 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 692 IPR027417 -
Ssu5g0432 1384 SMART iq_5 598 620 IPR000048 GO:0005515
Ssu5g0432 1384 SMART iq_5 669 691 IPR000048 GO:0005515
Ssu5g0432 1384 SMART iq_5 717 739 IPR000048 GO:0005515
Ssu5g0432 1384 SMART iq_5 621 643 IPR000048 GO:0005515
Ssu5g0432 1384 SMART iq_5 646 668 IPR000048 GO:0005515
Ssu5g0432 1384 SMART iq_5 694 716 IPR000048 GO:0005515
Ssu5g0432 1384 SMART MYSc_2a 4 597 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g0432 1384 Coils Coil 839 915 - -
Ssu5g0432 1384 ProSiteProfiles IQ motif profile. 695 724 IPR000048 GO:0005515
Ssu5g0432 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 750 IPR027417 -
Ssu5g0432 1384 SMART DIL_2 1202 1309 IPR002710 -
Ssu5g0432 1384 Gene3D Kinesin motor domain 11 526 IPR036961 -
Ssu5g0432 1384 PRINTS Myosin heavy chain signature 345 373 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g0432 1384 PRINTS Myosin heavy chain signature 13 38 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g0432 1384 PRINTS Myosin heavy chain signature 292 320 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g0432 1384 PRINTS Myosin heavy chain signature 60 87 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g0432 1384 Gene3D - 531 597 - -
Ssu5g0432 1384 PANTHER PROTEIN OPAQUE1-LIKE 13 1381 - -
Ssu5g0432 1384 Coils Coil 780 807 - -
Ssu5g0432 1384 ProSiteProfiles IQ motif profile. 673 699 IPR000048 GO:0005515
Ssu5g0432 1384 Gene3D - 302 487 - -
Ssu5g0432 1384 Coils Coil 731 775 - -
Ssu5g0432 1384 Pfam Myosin head (motor domain) 11 584 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g0432 1384 CDD MYSc_Myo11 11 584 IPR036018 -
Ssu5g0432 1384 Gene3D - 598 648 - -
Ssu5g0432 1384 Gene3D - 697 746 - -
Ssu5g0432 1384 Gene3D - 649 696 - -
Ssu5g0432 1384 CDD MyosinXI_CBD 977 1350 IPR037975 GO:0007015
Ssu5g0432 1384 PANTHER MYOSIN 13 1381 - -
Ssu5g0432 1384 ProSiteProfiles Myosin motor domain profile. 1 596 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0432 Ssu-Chr5 8898500 8940196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0432 11 1379 Myosins gene family AT4G33200 73.484 0.0 2052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0432 K10357 - gmx:100790815 2568.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0432 5 8898500 8940196 Ssu5g0432 5 8898500 8940196 ECH
Ssu1g3580 1 91060636 91088315 Ssu5g0432 5 8898500 8940196 PCT