Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0421 ATGGGCGCATCAGGAAAATGGGTGAAAGCATTAATCGGGCTTAAGAAGCCCGACAACATCAACGAACACGGTGGGAAGAAGATGAAGTGGAGGCTATGGAAGAGTTCTTCTGCGGGAGAAAACAGATCTCAACATGAGTGTGTATCGTCGGATTCTTTCACTGCTGCAGTGGCCACTGTAGTGAGAGCTCCGCCTAAGGATTTCAAACTCCTCAAGCAAGAATGGGCCGCCACCAGAATCCAAACTGCTTTCCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTCGTGAGGAAGCAGGCTGCGGTTACATTGAGGTGCATGCAGGCCTTGGTTCGTGTCCAGGCACGTGTAAGAGCTCGGCGCGTGCGAATGTCCATTGAGGGGCAAGCAGTGCAGAGCATGATCAATGAGCGCCGCAGCAAAGCTGATCTCTTCAAACAAGCAGAGGAAGGGTGGTGCGATAGCAAAGGATCATTGGAAGATGTCAAGACAAAATTACAGATGAGGCAAGAAGGAGCTTCCAAGAGGGAGAGAGCAATTGCCTACTCTCTTGCCCACAAGGTAACAATAGATTGA 621 0.5089 MGASGKWVKALIGLKKPDNINEHGGKKMKWRLWKSSSAGENRSQHECVSSDSFTAAVATVVRAPPKDFKLLKQEWAATRIQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQSMINERRSKADLFKQAEEGWCDSKGSLEDVKTKLQMRQEGASKRERAIAYSLAHKVTID 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0421 206 ProSiteProfiles IQ motif profile. 73 101 IPR000048 GO:0005515
Ssu5g0421 206 SMART iq_5 95 116 IPR000048 GO:0005515
Ssu5g0421 206 SMART iq_5 72 94 IPR000048 GO:0005515
Ssu5g0421 206 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 204 - -
Ssu5g0421 206 Pfam IQ calmodulin-binding motif 75 94 IPR000048 GO:0005515
Ssu5g0421 206 Pfam IQ calmodulin-binding motif 97 114 IPR000048 GO:0005515
Ssu5g0421 206 ProSiteProfiles IQ motif profile. 97 124 IPR000048 GO:0005515
Ssu5g0421 206 PANTHER IQ-DOMAIN 5-RELATED 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0421 Ssu-Chr5 8717195 8718824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0421 1 202 IQD Protein Family AT2G26180 67.925 1.98e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0421 - - gmx:100787102 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0421 5 8717195 8718824 Ssu1g3625 1 91761880 91763930 PCT