Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0420 ATGTTTAATCCTTGGCTTTTGCAGCAATGGAGATCAACCCCCATCTCTAATTCAAGAGCAAATGCCTCGCTCAACAATCATGAGATGGACAAGGCTAACTGGGGATGGAATTGGTTGGAACGTTGGATGGCAGCTAAGCCATGGGAGAGTAGATTAATGGAACAAACCCATCATGCTGATGCCACAGATAAGACCCCTCCTCCACCAAAGAAATGTGCGGACTCCTCAAATTCAAAAACATCAGAACCATGCAATGTTAAAGTCAGAAAGAACAATGTCACCACAAGGGTTTCTGCTAGACCTCCCCATATTGGGCAAGCTACTCGTTCATCCTCAAGTCCAAGTTCTGAGTTTCACTATGATGAGAGCTCTGCTTCTTCCTCAATATGCACATCTACAACACCAATATCTGGGAGTGCTGCATTGCCTTGTGACAGGACAGAGGATAGTAATAATAGGCCTAGTTACATGAACCTCACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAATCATCAATACAATAGATCTCAGAGGCAGCAATCCATGGATGAGTTCCAGTTTCTCAAAAGCACTGCTGGTTCTGACCCTTCAATCAACTTTTCTAGGCCACTTTACCTACCAACATACTTGGATAAGAGGCCACGGTGA 651 0.447 MFNPWLLQQWRSTPISNSRANASLNNHEMDKANWGWNWLERWMAAKPWESRLMEQTHHADATDKTPPPPKKCADSSNSKTSEPCNVKVRKNNVTTRVSARPPHIGQATRSSSSPSSEFHYDESSASSSICTSTTPISGSAALPCDRTEDSNNRPSYMNLTESTKAKQKTSNHQYNRSQRQQSMDEFQFLKSTAGSDPSINFSRPLYLPTYLDKRPR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0420 216 MobiDBLite consensus disorder prediction 71 199 - -
Ssu5g0420 216 MobiDBLite consensus disorder prediction 55 216 - -
Ssu5g0420 216 PANTHER IQ-DOMAIN 5-RELATED 19 214 - -
Ssu5g0420 216 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 19 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0420 Ssu-Chr5 8716500 8717150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0420 8 213 IQD Protein Family AT2G26180 50.446 1.36e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0420 - - gmx:100787102 356.681