Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0418 ATGGAGGGAGTTagagtgaaagagaaagaaacagcGACATGTGGGGGTggttcatcatcatcatcatcatcatcatcgccTTCAAGGTTTTCCCCACAGCCCATGGAAGGGTTGCAGGAGGTGGGTCCCCCTCCGTTTCTCACCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGTCTCCATTGTGTCGTGGAGCGCTGCTCGCAACAGCTTTGTTGTGTGGGACTCTTACGAGTTTTCTACTAACATTCTACCTCGTTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGACAGATGGGAATTTGCAAACAAAGGGTTTCTGGCAGGACAAAGGCACTTATTGAAGACCatcaagagaagaagaaatgtaTCACAGAGTATGCAACAAAGAGGAGTAGGTGGAGCTAGTGTTGAAGTGGGGGAGTCTGGACTAGAAGGTGAGTTGGAGAGGTTGAAGAGAGATACGAACATTTCGATGGCAGAAGTTGTGAGGCTGAGGCATCAGCAGCTGAACTCAAGGGACCAATTGAGTGCCATGGAGGCCAGGTTGCAGGCCACAGAGAAGAAACAGCAGCAGATGATGACTTTCCTTGCCAAAGCACTGAGTAATCTATCTTTCATGCAGCACTTAGTCCACAAGACCCCCCAAAGCAGAGAAGTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTAACTGCTAGCCCAAGTGTGGAGAACTTGCAACAAGATGATCCTGTAACAGTGGTGGACTATCCAAGCCATGATCAAGATTTGGCAACTATGGAGCCTGAGATGGACACTTTTTTCTCAACAGCTTATGATGGTGAACTTGGCAGTGAAATCAAAGTGCCTGCATCAATTTCAGTTGGGGATACAATCTTGGAGGACTTGCTCAACAAAGAGTTGGTTACTGGGAATCCAGAGGATGAGGTGATAATTGGTGATTGTTCCAAAGTTGATGTGCCTGTGGAGGATTTGGTAGCAGATACTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGACCATATGGACTATCTTGGGTCCAAACCATAG 1101 0.4414 MEGVRVKEKETATCGGGSSSSSSSSSPSRFSPQPMEGLQEVGPPPFLTKIFDMVEDPSTVSIVSWSAARNSFVVWDSYEFSTNILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANKGFLAGQRHLLKTIKRRRNVSQSMQQRGVGGASVEVGESGLEGELERLKRDTNISMAEVVRLRHQQLNSRDQLSAMEARLQATEKKQQQMMTFLAKALSNLSFMQHLVHKTPQSREVLGVEINRKRRLTASPSVENLQQDDPVTVVDYPSHDQDLATMEPEMDTFFSTAYDGELGSEIKVPASISVGDTILEDLLNKELVTGNPEDEVIIGDCSKVDVPVEDLVADTDDWSEQLQDLVDHMDYLGSKP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0418 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 260 IPR027725 -
Ssu5g0418 366 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0418 366 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0418 366 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0418 366 MobiDBLite consensus disorder prediction 13 33 - -
Ssu5g0418 366 Gene3D - 39 136 IPR036388 -
Ssu5g0418 366 MobiDBLite consensus disorder prediction 1 38 - -
Ssu5g0418 366 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0418 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 260 - -
Ssu5g0418 366 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0418 366 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0418 366 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0418 Ssu-Chr5 8697540 8700222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0418 32 366 HSF AT2G26150 52.819 6.73e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu5g0418 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0418 K09419 - gmx:100778558 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0418 5 8697540 8700222 Ssu1g3627 1 91809993 91811471 PCT