Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0413 ATGTCCAATTTGACGTCTGCATCCAGTGAAATAAGTGCTTCTTCCGGAATCAGGAATGACAATGGTTCTCTCCATGCTCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGCGAAGTCTTCCTGGCCACCCAGACCCTAAGGCAGAAGTAATAGTCTTAACTCCGCAGACTCTTTTGGCAACGAACCAGTTTATTTGTGAGATTTGTCACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACAGAAGAGGACATAATTTGCCATGGAagctaaagaaaaagaataacaaagacGCAAGAAAGAAAGTGTATGTGTGCCCAGAACCAACGTGCGTTCACCATGACCCATCAAGGGCCCTCGGGGACCTCACTGGAATCAAGAAACACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGTTACGCGGTTCAATCAGATTGGAAAGCCCACTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGACTGTGGCACCATTTTCTCtagAAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGCATTAGGGCAGTGAACCCTCACCCTCTACTATCAACTCACACCCAATTTCGTAGCCATGGCCTTCAAGCACCATCCCTACTTAAAAGAGAACAAGAGTTCAGCTTGTTAAGTCCAGCATGGTTAACTTCTCCAGCGGTAGAAGAAGCAATCCACGGTCAAACTATAAGAACCTTAGACTTCTCCTCGCCACAGTTGTTCCCAACACATGTCAACCACTCCTCAGTCCACCATGAAAACCCTAACCCTACTAATAATACTACTACGACAACCACGTTACTTCCTTCTTTGAGTTCTTTCCACTATTCCACTTCTTCTCCTCACACGTCAGCCACAGGTTTGTTGCAAAGAGCCTCACAAGTAGGTGCAACAGTGAGTGCACCTTCGTCATCACAGGCCATGCTAGTTAGACCCCACTTGTTACTGCAGCAGGTTCACGTGCCCGAATGTACAACGGGGTATATGGCTTCATCTTCAGCCGTTTCCGGAATGGTTATGCCTTCACGTGAAGAAATTGGGACTGCGGTCGCTCGTGGATTGGCATCTTGA 1146 0.452 MSNLTSASSEISASSGIRNDNGSLHAQYSSTSINQEPQPKKKRSLPGHPDPKAEVIVLTPQTLLATNQFICEICHKGFQRDQNLQLHRRGHNLPWKLKKKNNKDARKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESIRAVNPHPLLSTHTQFRSHGLQAPSLLKREQEFSLLSPAWLTSPAVEEAIHGQTIRTLDFSSPQLFPTHVNHSSVHHENPNPTNNTTTTTTLLPSLSSFHYSTSSPHTSATGLLQRASQVGATVSAPSSSQAMLVRPHLLLQQVHVPECTTGYMASSSAVSGMVMPSREEIGTAVARGLAS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0413 381 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Ssu5g0413 381 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 337 - -
Ssu5g0413 381 MobiDBLite consensus disorder prediction 1 52 - -
Ssu5g0413 381 SMART c2h2final6 69 91 IPR013087 -
Ssu5g0413 381 SMART c2h2final6 110 140 IPR013087 -
Ssu5g0413 381 SMART c2h2final6 145 165 IPR013087 -
Ssu5g0413 381 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Ssu5g0413 381 Gene3D Classic Zinc Finger 47 116 - -
Ssu5g0413 381 MobiDBLite consensus disorder prediction 1 39 - -
Ssu5g0413 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Ssu5g0413 381 Gene3D Classic Zinc Finger 123 202 - -
Ssu5g0413 381 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0413 Ssu-Chr5 8613033 8616336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0413 1 325 IDZ Gene Family AT1G55110 52.299 2.89e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g0413 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0413 K25870 - gmx:100783557 531.176