Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0405 ATGTCATCAATTGCGATTCTTCTTTTTCAGGATCTCTGGTCCCTCCCGCGCCTCCACCGTGTCTTCTCAGAATCGTTTTTGCAGTCTCTACGCGAATCGGTTAGGAGCTCGAGTTGCAAAAGCACGGAGTTGGAGCAATGCCGCGACGAGTCGGCGGCGTTGGTTTTGAAGTTCGTGGCGATTGCGACGATTCTCGTGGCGGGGTTTGGGGGAATCGCGATTCCGCTGGTGGGGAAATCGCGGCGGTTCCTGCTTCCCGAAGGGGACGTGTTCGCGGCGGCGAAGGCGCTCGCGGCGGGGGTGATTCTAGCGACGGGGTTCGTGCACATGCTTCGGGACTCGTGGGACGCGCTTCAGGACCCGTGTTTGGGGCCATACTCGCGCGCGTGGTCCAAGTTCCCCTTCACCGGTTTCTTCGCCATGGTGTCGGCCCTCTGCACTCTCCTCGTTGACTTTTTGGCGACCGACTATTACGAGCGCAGAGAGGGCCGTGGGCGCGTGGAGCGTGGGAAGGTTGTTGAAGATGGGGAGGAGGCGTTGTTGGAAACGGGAATCGTGGAGGTTAGGATGTTGGGACGGTGTTTGGGGGAGAGGGAAGCGGTGGATTGCGCGTTCACGCGGCGCAGCGCAGACACTCCCATTCGCACCACCGCGACGACCTGGAAAGTACCTCTCGGCACGTCGTCGTTTCACagGTGTTGGAACTTGGGATTGTATCACATTCGATGA 729 0.594 MSSIAILLFQDLWSLPRLHRVFSESFLQSLRESVRSSSCKSTELEQCRDESAALVLKFVAIATILVAGFGGIAIPLVGKSRRFLLPEGDVFAAAKALAAGVILATGFVHMLRDSWDALQDPCLGPYSRAWSKFPFTGFFAMVSALCTLLVDFLATDYYERREGRGRVERGKVVEDGEEALLETGIVEVRMLGRCLGEREAVDCAFTRRSADTPIRTTATTWKVPLGTSSFHRCWNLGLYHIR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0405 242 PANTHER ZINC/IRON TRANSPORTER 36 172 - -
Ssu5g0405 242 Pfam ZIP Zinc transporter 56 165 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Ssu5g0405 242 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 36 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0405 Ssu-Chr5 8495006 8498668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0405 39 166 Inorganic Solute Cotransporters AT1G10970 63.281 6.45e-51 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0405 K14709 - gmx:100809426 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0405 5 8495006 8498668 Ssu1g3633 1 91940068 91941273 PCT