Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0404 ATGAAACCCCTAATTGTGGCATTATCCTTCCATCAGTTCTTTGAAGGATTTGCACTTGGTGGTTGCATCTCCCAAGCCCAATTCAAGACCTTATCAGCAACGATAATGTCATGTTTTTTTGCACTAACAACGCCACTTGGGGTTGCTATTGGGGCTGGTGTTGCCTCAATTTTTAACCCTTACAGTCCAGGAGCACTCATCACTGAAGGCATCTTGGACTCCTTGTCAGCTGGGATTTTAGTGTATATGGCTTTAGTGGACTTAATAGCTGCAGATTTTCTTGGCAACAAAATGCGTTGTAACTTTAGGCTTCAGATAATATGTTactgttttcttttccttgggGCTGGATTGATGTCTTCCCTCGCAATTTGGGCATGA 381 0.4068 MKPLIVALSFHQFFEGFALGGCISQAQFKTLSATIMSCFFALTTPLGVAIGAGVASIFNPYSPGALITEGILDSLSAGILVYMALVDLIAADFLGNKMRCNFRLQIICYCFLFLGAGLMSSLAIWA 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0404 126 Pfam ZIP Zinc transporter 3 123 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Ssu5g0404 126 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 2 126 - -
Ssu5g0404 126 PANTHER ZINC/IRON TRANSPORTER 2 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0404 Ssu-Chr5 8494584 8494964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0404 1 126 Inorganic Solute Cotransporters AT1G60960 81.746 1.84e-68 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0404 K14709 - gmx:100809426 236.498