Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0403 ATGACTCCTTATTCTCTGAACCCACCAGGTCCAGCTTCCACACAAGGTCAAACCCAACTCTTCATTTCTCCTAATAATCAGGACTGCCGTACCTTTTTCAACATATTTGATCCAAGGCAAACCATAGAAATTGGAGGgttaagagaaaattattatCAGCAGGATGACAAGATGGTATTGCACGATGGATCATCAAGCAATTGCAATTCATCCTTCATTTCATCTGAGCCTGTTGTCATGGACGATCCAAGCAGCGCATGTGAGCTTAATTTACCCTCCTGCAgaatggaggaggaggaggagggagAGAGCAAAAATGGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAggttgatgaaaaaaatgatgAGACCGAGTAGTAGTTCAACCACTGACAAAGCAATCAATCCAAGTCCAATAAGATTCCAAAACCAAGGGCACGAAAGCAGGTATAGCCAAAGAAGCCATCGTAACAACAGCAGTAGCACCACTAGGGTTTGTTCGGATTGTAATACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGGCGGAAGCTGCAAATGGTTTGGTCACTCCCATAAATGCAGCATGTGCAAAGACCAGAGTGTATAACAAGGAAAAGAAGTGTCGTACAAACCATTTTGCACAGTTCAAGAATAAGTACAAGTCCACTACTACTGCAGGCTCATCTGAGGGGGTGAAGAAGCTTGAATATTTCAACGACTTCGCCCTAAGTTTGAGGAGTAACTCTTCTTTTCAGCAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTGATGGACTTATCTTGTGGTTTTGTTCACTTATAA 906 0.4161 MTPYSLNPPGPASTQGQTQLFISPNNQDCRTFFNIFDPRQTIEIGGLRENYYQQDDKMVLHDGSSSNCNSSFISSEPVVMDDPSSACELNLPSCRMEEEEEGESKNGHGSGKWMSSKMRLMKKMMRPSSSSTTDKAINPSPIRFQNQGHESRYSQRSHRNNSSSTTRVCSDCNTSSTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGLVTPINAACAKTRVYNKEKKCRTNHFAQFKNKYKSTTTAGSSEGVKKLEYFNDFALSLRSNSSFQQVFPRDEVAEAAMLLMDLSCGFVHL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0403 301 MobiDBLite consensus disorder prediction 125 182 - -
Ssu5g0403 301 CDD ZnF_GATA 168 205 IPR000679 GO:0006355|GO:0043565
Ssu5g0403 301 Gene3D - 162 208 IPR013088 GO:0006355|GO:0008270
Ssu5g0403 301 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 26 300 - -
Ssu5g0403 301 ProSitePatterns GATA-type zinc finger domain. 169 194 IPR000679 GO:0006355|GO:0043565
Ssu5g0403 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 203 - -
Ssu5g0403 301 Pfam GATA zinc finger 169 202 IPR000679 GO:0006355|GO:0043565
Ssu5g0403 301 MobiDBLite consensus disorder prediction 125 185 - -
Ssu5g0403 301 SMART GATA_3 163 214 IPR000679 GO:0006355|GO:0043565
Ssu5g0403 301 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 26 300 - -
Ssu5g0403 301 ProSiteProfiles GATA-type zinc finger domain profile. 163 199 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0403 Ssu-Chr5 8470291 8472482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0403 107 300 C2C2-Gata Transcription Factor Family AT4G26150 38.636 2.96e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu5g0403 GATA 3.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0403 - - gmx:100780326 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0403 5 8470291 8472482 Ssu1g3635 1 91964812 91965521 PCT