Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0399 ATGCCCAAGATGAAGCACCTTCTCAGAAAGCTTCACATCGGTGGTGGCGCTGCCACCATCAACCACAGTCACAGTGACAATCACAACGCATTGTCGCACGCGCACACTCCCTCCTCCTCCGCGCTCCCTTCCCCCACCGTCGTTTCGGATCGGAGCCCCGTCGTCGAGGCCCGAAACGACGTCTTCGACCGCAACCTCCTGCAGGAGGAAGAGTTTCAGATGCAACTCGCGCTCGCAATCAGCGCCTCCGATTCCGATCGCCGCGACACCGCCGAATCGGCGCAGATCGACGCCGCCAAACAGATCAGCCTCGGTTACTCTGCTTCCCTCACTGACACTCAAGCCCTAGTTCAGTTCCAATCCCTTCGTTATTggAACTACAATGTGATTGGTTATGATGAGAAAGTGATGGATGGGTTTTATGATGTTTATGGGGTTACCTCGAATTTGGTTGAGCGGGGGAAGATGCCGTTGTTGGTGGATCTGCAGACTGCTCCTGTCTCGGGAGATGTTGGTTGTGAGGTGATTTTGGTGAACCACGTGGTTGATCTTGTGCTCAATCAGCTTGAGAGGAAGGCGTGTAGTTTGGTGGAGGAGTGTTGTGTTTCTGAACTGGGACTGATTTTGAGTGGCTTGCTTCAGAAGCTCGCAGATGTTGTTGTTAATAGAATGGGGGGACCAGTTGTTAATGCTGAAAAACTTACAAAGAGGTGGGCTATGAGGAGTTGCGAGTTACGGGATTCTATGAGAACCATTGTCCTTCCCCTTGGATGTCTTGATGTCGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAACATTCCCTGCATGCTGGTAAAAGGGAGCTATTATACAGGAACTGATGATGGGGCTGTGAATTTGATTAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGCGCTCTTATTCCTGCTGAGGTACCCAGCAGCCAGCTCGAAAACAGCAGTTTTGCTGTTAGGGGTTGTGCAGAGATTGTAGGACTACCTAACAAGACACATTCGATGGTAGATTATAGAACTGGTGTGCCGGGAGCCTTTTCTGATTGTGGTAGAATTTCAACAGTGGGGAGGGTCCAGACAGAAGAATTATTAGTTATGGGCATTCAAACAAAGCCAGATGAAATAAATCATGTTAAAGTAAATGAGACGGGGAGTTTTGAACATACAGAAGCATATGAATGCTCATCACATACAGAACCATCACCTGCAGAAAATATGCGTGTAAAAAATGTCTCCAAGTATGTTCTCAGTGCAGCAAAGGACCCAGAATTTGCCCAAAAACTGCACAATGTTCTAGTAGAGAGTGGTGCCTTACCTCCTCCTGATCTTTTTTCACATATAAATCTCCAAGATAGGGTTgtagataaattaaatgaaaaaaatgttgttgataCTGTTCAAGCTGACACAAATAGATTGTTATTAAGCTATGAGAAGTCTCTCATACCCTCACATGGCGTAGGCTCTGCCAGTGATACTAGGTTATGTCAATCAGCTGACTGGTTAGCTGAACAGCAAAAAGAATTGCATACAGATGATGTTGAATTTTACAATTCTTCACAGGGTGATAATATGAGGAACGGGTTTGTTACTGTCTCTGATAGAGATAATGACATAGAGCAATCTAATGCAATAAGTAATGATTTGGCTTCTGTCCATTCACGTAAGATATGTAAAGAAAACTGTCCTGAGTCTTCGTTGCCAAAGGCAGCTCTTTCTGGCCAAAGGCAGAATGGGGTTGATTGTTTTAGTGACTATGATGAAAATGGTTTTGGAAACAATGTTGGAGCTTCTTTTAATAACATTGAATTGGGGAAAGATTCAGCTGTTCAAATAAATGAGACGGCAGTCAATGGAGATTCTTATGATGGTAGAAACAAGAAAGTTAACCCAGTACTTGGTGAAGGCATAGAATGGGAAATTCAATGGGAGGATCTTTGCATTGGTGAGCGTATTGGTATTGGTTCTTACGGTGAAGTTTATCATGCTGATTGCAATGGCAGTGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAGTTCAAATCCGAAGTTGAGATCATGTTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCTATTACTCGCCCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGAGGCAGTTTATATAGGCTATTACATCGTCCCAATCTTCGACTTGATGAGAAGAGACGGTTGCGCATGGCTCTAGATGTGGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAGGTCTGTGATTTTGGTCTGTCTCGGATGAAGCACCACACATTTTTGTCATCGAAGTCTTGTGCTGGAACGCCTGAGTGGATGGCGCCAGAAGTCTTAAGAAATGAGCCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGACTACCGCAAGAATTCCCTGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCGCAAATAATATGTGATTGCTGGCAAACGGAGCCACACTTGCGGccatcattctcacaactgatGTCTCGTCTTTTCAATCTTCAACATTTGATGGTCCCAAAAACGAGCTCAACCCATTAA 2796 0.4413 MPKMKHLLRKLHIGGGAATINHSHSDNHNALSHAHTPSSSALPSPTVVSDRSPVVEARNDVFDRNLLQEEEFQMQLALAISASDSDRRDTAESAQIDAAKQISLGYSASLTDTQALVQFQSLRYWNYNVIGYDEKVMDGFYDVYGVTSNLVERGKMPLLVDLQTAPVSGDVGCEVILVNHVVDLVLNQLERKACSLVEECCVSELGLILSGLLQKLADVVVNRMGGPVVNAEKLTKRWAMRSCELRDSMRTIVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGALIPAEVPSSQLENSSFAVRGCAEIVGLPNKTHSMVDYRTGVPGAFSDCGRISTVGRVQTEELLVMGIQTKPDEINHVKVNETGSFEHTEAYECSSHTEPSPAENMRVKNVSKYVLSAAKDPEFAQKLHNVLVESGALPPPDLFSHINLQDRVVDKLNEKNVVDTVQADTNRLLLSYEKSLIPSHGVGSASDTRLCQSADWLAEQQKELHTDDVEFYNSSQGDNMRNGFVTVSDRDNDIEQSNAISNDLASVHSRKICKENCPESSLPKAALSGQRQNGVDCFSDYDENGFGNNVGASFNNIELGKDSAVQINETAVNGDSYDGRNKKVNPVLGEGIEWEIQWEDLCIGERIGIGSYGEVYHADCNGSEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNLRLDEKRRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDRHWVVKVCDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTARIPWKGLNPMQVVGAVGFQNKRLEIPEDVNPVVAQIICDCWQTEPHLRPSFSQLMSRLFNLQHLMVPKTSSTH 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0399 931 Gene3D Transferase(Phosphotransferase) domain 1 743 927 - -
Ssu5g0399 931 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 58 928 - -
Ssu5g0399 931 MobiDBLite consensus disorder prediction 18 51 - -
Ssu5g0399 931 MobiDBLite consensus disorder prediction 20 47 - -
Ssu5g0399 931 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Ssu5g0399 931 SMART serkin_6 664 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0399 931 PANTHER SERINE-THREONINE PROTEIN KINASE 58 928 - -
Ssu5g0399 931 Pfam Ethylene-responsive protein kinase Le-CTR1 118 321 - -
Ssu5g0399 931 Gene3D Phosphorylase Kinase; domain 1 657 741 - -
Ssu5g0399 931 Pfam Protein tyrosine and serine/threonine kinase 666 916 IPR001245 GO:0004672|GO:0006468
Ssu5g0399 931 SUPERFAMILY Protein kinase-like (PK-like) 654 917 IPR011009 -
Ssu5g0399 931 CDD STKc_MAP3K-like 670 916 - -
Ssu5g0399 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Ssu5g0399 931 ProSiteProfiles Protein kinase domain profile. 664 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0399 931 PRINTS Tyrosine kinase catalytic domain signature 824 834 IPR001245 GO:0004672|GO:0006468
Ssu5g0399 931 PRINTS Tyrosine kinase catalytic domain signature 843 865 IPR001245 GO:0004672|GO:0006468
Ssu5g0399 931 PRINTS Tyrosine kinase catalytic domain signature 777 795 IPR001245 GO:0004672|GO:0006468
Ssu5g0399 931 PRINTS Tyrosine kinase catalytic domain signature 738 751 IPR001245 GO:0004672|GO:0006468
Ssu5g0399 931 PRINTS Tyrosine kinase catalytic domain signature 887 909 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0399 Ssu-Chr5 8399340 8409958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0399 614 930 MAP Kinase Kinase Kinase AT5G11850 77.603 1.33e-172 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu5g0399 PK_Tyr_Ser-Thr 5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0399 K04424 - gmx:100779137 1603.96