Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0391 ATGTCGCGAGTAAGAAGATCACGCTCACCGTCACCGTCCTGTGGTGACAGTCACTTGGTGCTGCTGGTGCCTGTGGCGCTCGTTCTCTTCTTCCACTCGCTTCTTCTGCTACCTCACTCCTCGCTCGCTATTCGACCTACTGAGTCGGATCGGATCGAACTCGCCAACGCGACCGAGTCCAACGTCTCGCTCTCGCGTCCGAGGGAAGGAAGCTTCGCCGACATGATTGATCGCGCGCTGGAGCACGAGTTCACCGAGAACGACCAGAACGAAGCAGCTGATCCGGGAAGCTTCAACAACAGTGTAGCAGAACAACAGGCTGTTCTGGAAACTGTGGCCAGAGTCACACCAAACAAGAATGACACAAAAGATGAAAAGTCATTTCAACTACATCATGTATTCAATAGAGCTGAGGATACCCCAATGTTGATAGATCGAAAGGACAATGTCTTTATCATTTCTAACTTTAAATCCAAGTATCCGGTGCTCCAGCTAGATTTACGATTGATTTCAGACCTGGTAGTTGCTATTGTTTCGGCAACTTGTGGTGGCGTTGCATTTGCTTTTGCTGGACAACCGGTCATTACAGGATATCTTCTAGCTGGCTCCATAGTTGGACCTGGTGGCTTTAACTTCATCAGCGAAATGGTGCAGGTGGAAACAGTGGCACAATTTGGTGTAATATTTCTTCTGTTTGCATTGGGCCTGGAGTTCTCCACAACAAAGCTTCGAATTGTTCGAGCTGTTGCTGTTCTTGGAGGCCTACTTCagatttttctatttatgtGCATGTGTGGACTTACTGTATCgCTATGTGGTGGAAAAGCTTCAGAAGGGGTTTTTGTTGGTGCTTTCCTTTCCATGTCTTCAACAGCGGTGGTCTTAAAGTTTTTGATGGAAAAGAACACCACTAATGTTCTTCATGGACAAGTCACAATTGGGACCCTTATTTTGCAGGATTGTGCTGTTGGATTGCTCTTTGCACTGCTTCCAGTTTTGGGTGGCACCTCAGGCGTTTTTCAAGGAGTGTTATCAATGACCAAGCTGTTGGTGACATTGATTGCATTCCTCTCTGTTCTGTCAATATTGTCTCGCACTTGCCTTCCGTGGTTGCTTAAACTGATGATAAGCCTCTCATCACAGACAAATGAACTCTATCAATTGGCATCAGTTGCATTCTGCTTGCTAGTAGCCTGGTGTAGCGATAAGTTGGGACTAAGTCTAGAACTAGGTTCCTTTGCTGCTGGAGTGATGATTGCAACCACTGATCTGGGTCAACATACACTAGAGCAAaTTGAACCTATTCGCAATCTTTTTGCTGCTCTTTTCCTTGCCAGCATTGGAATGCTGATTCATGTTCATTTTCTTTGGAACCATGTCGATATTTTGGTAGCATCCGTAATATTGGTGATTGTCATAAAAACAATCATAATTGCATCTGTTGTGAAAGGATTTGGTTACAATAACAAGACTTCAATACTTGTTGGAATGTCGATGGCACAGATAGGAGAATTTGCTTTTGTTCTTCTTAGTCGTGCTTCAAATCTTCATCTAGTTGAGGGTAAATTATATCTGCTGCTTCTTGGAACCACAGCTCTTAGTCTGGTATga 1611 0.4432 MSRVRRSRSPSPSCGDSHLVLLVPVALVLFFHSLLLLPHSSLAIRPTESDRIELANATESNVSLSRPREGSFADMIDRALEHEFTENDQNEAADPGSFNNSVAEQQAVLETVARVTPNKNDTKDEKSFQLHHVFNRAEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFISEMVQVETVAQFGVIFLLFALGLEFSTTKLRIVRAVAVLGGLLQIFLFMCMCGLTVSLCGGKASEGVFVGAFLSMSSTAVVLKFLMEKNTTNVLHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSVLSILSRTCLPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMIATTDLGQHTLEQIEPIRNLFAALFLASIGMLIHVHFLWNHVDILVASVILVIVIKTIIIASVVKGFGYNNKTSILVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0391 536 PANTHER K(+) EFFLUX ANTIPORTER 6 19 536 - -
Ssu5g0391 536 Pfam Sodium/hydrogen exchanger family 174 536 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu5g0391 536 Gene3D - 167 536 IPR038770 -
Ssu5g0391 536 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 19 536 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0391 Ssu-Chr5 8278687 8290951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0391 66 536 Antiporters AT5G11800 84.277 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0391 - - gmx:100811030 909.057