Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0390 ATGAAAACTGAGATAGGACTTGACTTTATATTTTGCCGTCCTCAGTTTGCAATTGCAAAACATTGGGTGGGATTGGGAAAGGTCCAAAAAGAAAACTGTGCTCTATTGTTCTCTTTCTGTGCACTTTGGCTTCCCTTGCACTTTTTTGCTCCCACTCTCCACATTAGCAACCACCAGAGACGACAAGctaggatattaattatattattcttgaTCTGTTCATTGCGAAATAAGGATGGGAAGGAATTGCTCATATTGTGGAAACTTGGGTCACAATTCAAGACTTGCAACACTCACAAAAGAGGACTGAAGCTTTTTGGAGTGCAACTTGAcctttgttcttgttcatcaccatcctcctcctcttcttcatCTACACGTTTGGACATGAGAAGAAGTTTCAGCATGGACTACCTTCTATCTTCACGGTCCTGCCCCTCTTCATCTTTTCTACTTGGTGTGGATGAAAATTCAGATAAAACATCTGTTGGGTACATAGCCAGTGTCGGTGGTGGCCTCACTTCAACAAcccaagaaaggaaaaaagGTGTGCAATGGAGTGAGGAGGAGCACAAGAAATTTCTTGTAGGACTAAAGAAGCTAGGGAAGGGTGATTGGAGAGGCATAGCTAAAAGTTTTGTGACAACAAGAACACCATCCCAAGTGGCCAGTCAtgcacaaaaatattttttgcatcAAAATAGCTTCAATAAAAGAAAGCGCCGTCATAGCCTCTTGGatgTGGGAAGAAATGAAACCATTAATGAACCATTTAATACTTGTTTTGAGGCAAGTGGTCAATTTGGGTTCCCATCAGGGACTACTTGTCCTCGGTGGGTTTCTTATCATCATTCAATGCTGAATTGGGCCACCACTTCAACAAACCATAGTACTCATCAAGTGCTGCCCCAGATCTAG 918 0.3791 MKTEIGLDFIFCRPQFAIAKHWVGLGKVQKENCALLFSFCALWLPLHFFAPTLHISNHQRRQARILIILFLICSLRNKDGKELLILWKLGSQFKTCNTHKRGLKLFGVQLDLCSCSSPSSSSSSSTRLDMRRSFSMDYLLSSRSCPSSSFLLGVDENSDKTSVGYIASVGGGLTSTTQERKKGVQWSEEEHKKFLVGLKKLGKGDWRGIAKSFVTTRTPSQVASHAQKYFLHQNSFNKRKRRHSLLDVGRNETINEPFNTCFEASGQFGFPSGTTCPRWVSYHHSMLNWATTSTNHSTHQVLPQI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0390 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 234 IPR017930 -
Ssu5g0390 305 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 91 254 - -
Ssu5g0390 305 PANTHER TRANSCRIPTION FACTOR KUA1 91 254 - -
Ssu5g0390 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 181 233 IPR006447 GO:0003677
Ssu5g0390 305 SMART sant 182 232 IPR001005 -
Ssu5g0390 305 CDD SANT 186 230 IPR001005 -
Ssu5g0390 305 Pfam Myb-like DNA-binding domain 185 230 IPR001005 -
Ssu5g0390 305 ProSiteProfiles SANT domain profile. 186 234 IPR017884 -
Ssu5g0390 305 ProSiteProfiles Myb-like domain profile. 178 230 IPR001005 -
Ssu5g0390 305 SUPERFAMILY Homeodomain-like 179 235 IPR009057 -
Ssu5g0390 305 Gene3D - 184 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0390 Ssu-Chr5 8264205 8265934 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu5g0390 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0390 - - gmx:100779256 264.618