Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0389 ATGGAGAACAATATGTACACTGCTCCACTGGACATGGCTGGCCGAAATTCTGCTGTCATAGAAGGAATTACACAGCATTTAGCACCAAAGCGAGTCATTTGTTGCTATTCATTTGACCTCAACAACCAAAACCCCATTATAAATGGAATTCCAGTACTTGTTGGACAGCAAGGTGAACCTACAATTGATGTCCATGTAGATGGTTGCTTCATAAACCCTGCTAGTGTTGCTGATTCCAATTCATTTGTCACATCACAAGGAAAGACTGTTGTAGGAGATGCCTCAAATCCCATTAACAACAATGACTTTCAAGAACATTTAGTTGGAGGAAGGCCAATTGCTTCTGCTTTACTTGCTGCTAGAATTGGCCTTCAAGAAAATCTAGAGTGTTCAGCAGCTTTGCCTCCTTCAATCTGCTCATTGGAAGCATTGGGACCATATATCTTAAATAATTGGCAGGACACATCAAACCCTTTGCCTGCAGCTTTTGGTGACCATGCCTATGATGAATTACCCGGTATCGGTAAGTGGAATTTGAACAAGTTTCTGAAAGCTCCAGAGGTTGATGGAGCTGGGATCCTGGCCTATTCATCCATAGGAAACATGGATCCAAATGGATGGACATCATCAAATGTTGCAAACTTGGCCAATTTTTCCTACAATTCCTCTAATTGTGGTAATGAGCTATCACTAAGTCTTGCAAGATCTGCAACTACAGGTCAGTGTTCAGAGATGAGCTGCTCTGACGCATCGCATAGCATGGATGGAACAAGGTCAGGCTTGGAGCAACCCTCCTGCAGCAGTAAGGAACTGTCTATGAGATTAGGCTCTAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCATATATCTTGCTGGAATTCAAGAGATACTTGCTCATATTGCAACATATTCATTTGAAAACGTAGAAGAGATAAATTACTCAGCTGCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCACACCAAAGAGAAGGGTAGGAATCAATCAAAATGCAAATTCCATGTTTGAAACACATGAAGAGTCTGAGTCTCCATTGCAAAGACATGCAACTGAATCAAAAAAATCCCAATTTCTCATGCTTCTACAGCTGGTGGACGATCGATATAGTCGGTGTTTGGATGAGATTCACACTGTGGTATCTGCATTCCATGCTGCTACTGAGCTGCATCCACACATGGCTGCACATTTTGTGCTTCAAACGATCTCTCTCTTATACAAGGACCTGCGAGAGAGGATTAACAATTATATTCTTGCCATGGGACCGGATTTTAACAGCTTTTGCTCAGAAGAGGAGAAGGAATGTTGTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTACAACAGCTGAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGtgcttggatgtttcagaatttCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATAAATGCGCGTGTTAGGCTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAATAGAAGAAAAGCATGTCGAAATGTAGAAGGAATGGAGAGCACTCATAGAAGCAGGATAAGCATCAACAATCAAATGTTGAATATCAATTGA 1710 0.4117 MENNMYTAPLDMAGRNSAVIEGITQHLAPKRVICCYSFDLNNQNPIINGIPVLVGQQGEPTIDVHVDGCFINPASVADSNSFVTSQGKTVVGDASNPINNNDFQEHLVGGRPIASALLAARIGLQENLECSAALPPSICSLEALGPYILNNWQDTSNPLPAAFGDHAYDELPGIGKWNLNKFLKAPEVDGAGILAYSSIGNMDPNGWTSSNVANLANFSYNSSNCGNELSLSLARSATTGQCSEMSCSDASHSMDGTRSGLEQPSCSSKELSMRLGSNKHVQFSPAILGSIYLAGIQEILAHIATYSFENVEEINYSAAGVRAGGNKSASAFTPKRRVGINQNANSMFETHEESESPLQRHATESKKSQFLMLLQLVDDRYSRCLDEIHTVVSAFHAATELHPHMAAHFVLQTISLLYKDLRERINNYILAMGPDFNSFCSEEEKECCVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRNVEGMESTHRSRISINNQMLNIN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0389 569 CDD homeodomain 470 531 IPR001356 GO:0003677
Ssu5g0389 569 Pfam Homeobox KN domain 487 526 IPR008422 GO:0003677|GO:0006355
Ssu5g0389 569 MobiDBLite consensus disorder prediction 246 265 - -
Ssu5g0389 569 SUPERFAMILY Homeodomain-like 472 539 IPR009057 -
Ssu5g0389 569 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 565 - -
Ssu5g0389 569 Pfam Associated with HOX 287 425 IPR006563 -
Ssu5g0389 569 SMART prehox3 281 427 IPR006563 -
Ssu5g0389 569 PANTHER HOMEOBOX PROTEIN ATH1 10 565 - -
Ssu5g0389 569 SMART HOX_1 470 534 IPR001356 GO:0003677
Ssu5g0389 569 ProSiteProfiles 'Homeobox' domain profile. 467 530 IPR001356 GO:0003677
Ssu5g0389 569 Gene3D - 473 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0389 Ssu-Chr5 8247334 8250425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0389 227 543 Homeobox Transcription Factor Family AT4G32980 55.864 8.75e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu5g0389 POX 7.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0389 - - gmx:100812648 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0389 5 8247334 8250425 Ssu5g0389 5 8247334 8250425 ECH
Ssu5g0389 5 8247334 8250425 Ssu1g3641 1 92030537 92032704 PCT