Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0385 ATGATAAAATTGCAGAACAAGTGGCATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGGGTCCTGAAGAAGTTCATGACGAGAATGTGACAATATTTGAAGCAAGGAAGGTCCTAAATGGGAGTCGGAGACTATGCTCTGTTTACTCCAAACAGGGTACCAAAGGACTCAACCAAAATGCTGCCTCTCTTCATGAGGGTTATGGGATGGAAGATGGAACATTTTGTGGCGTTTATGATGGGCATGGAGAGAATGGACACAAAGTGAGCAAAATAGTAAACTACTGTTTATCTTCCCTCATACTGGACCAAAAGAATGTTCTTGAAAAGATTGATGCGATAGAAAATGGTTATGACAACACCCCCAAAAAAAACCATGTTGACACGGTGAAAGAGGACTCTGCTGCAAAGAATTTTCAGAAATGA 432 0.412 MIKLQNKWHGYLHIRCIFRDSWGPEEVHDENVTIFEARKVLNGSRRLCSVYSKQGTKGLNQNAASLHEGYGMEDGTFCGVYDGHGENGHKVSKIVNYCLSSLILDQKNVLEKIDAIENGYDNTPKKNHVDTVKEDSAAKNFQK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0385 143 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 25 115 - -
Ssu5g0385 143 SUPERFAMILY PP2C-like 36 108 IPR036457 -
Ssu5g0385 143 MobiDBLite consensus disorder prediction 120 137 - -
Ssu5g0385 143 PANTHER ALPHABET, ISOFORM E-RELATED 25 115 - -
Ssu5g0385 143 MobiDBLite consensus disorder prediction 120 143 - -
Ssu5g0385 143 Gene3D - 29 143 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0385 Ssu-Chr5 8178254 8180209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0385 46 112 PP2C-type Phosphatase Gene Family AT5G26010 55.224 3.60e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0385 - - gmx:100815312 195.667