Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0384 ATGGGCAAGGAGGTGACGCTTCAACAGAATCTAGACTACTCTTGCAGTGGAACCACTGCTGTAGTTATCATAAAACAGCTAATCTGGGTGACTCGAGCAGTCTTGGGAACAATCTATGATGGAAAACTCATAGCCACTCAATTGACCACATATTTGAAGCCTGGATTACCTCGAGAAGCAGAAAGAATAAGGAGATGCAACGGTTGTGTCTATGCGTTGAAGGAAGAACCACATGTCCAGCGAGTGTGGATGCCCAACAATGAGAACTCCCCTGGCCTAGCCGTGTCTCGAGTTTTTGGAGATTTCCTACTCAAAGATCACGGTGTCATTGCCATCCCAGATATTTCATATCACCCTCTACCATCGAGTGACCAATTTATTGTTCTAGCAAGTGATGGGGTGTGGGATGTACTAAGCAACAACGAGGTTGCATCAATTGTGTGGAGTGTAGACACGGAAGAGGCAGCAGTAAGGGCAGTAGTGGAAGCAGCCACTGCTGCATGGAAAGAGAAGTATCCTTCCTATATGGCAGATGACTGCACCGTGGTTTGCCTCTTCCTGCAGAAGAAATCACAACTTCGGGCATGTGAAAACTAA 597 0.4657 MGKEVTLQQNLDYSCSGTTAVVIIKQLIWVTRAVLGTIYDGKLIATQLTTYLKPGLPREAERIRRCNGCVYALKEEPHVQRVWMPNNENSPGLAVSRVFGDFLLKDHGVIAIPDISYHPLPSSDQFIVLASDGVWDVLSNNEVASIVWSVDTEEAAVRAVVEAATAAWKEKYPSYMADDCTVVCLFLQKKSQLRACEN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0384 198 PANTHER ALPHABET, ISOFORM E-RELATED 1 192 - -
Ssu5g0384 198 SMART PP2C_4 4 185 IPR001932 -
Ssu5g0384 198 ProSiteProfiles PPM-type phosphatase domain profile. 1 187 IPR001932 -
Ssu5g0384 198 Pfam Protein phosphatase 2C 16 152 IPR001932 -
Ssu5g0384 198 Gene3D - 2 191 IPR036457 -
Ssu5g0384 198 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 192 - -
Ssu5g0384 198 CDD PP2Cc 7 152 IPR001932 -
Ssu5g0384 198 SUPERFAMILY PP2C-like 8 188 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0384 Ssu-Chr5 8175951 8178223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0384 1 191 PP2C-type Phosphatase Gene Family AT1G16220 53.266 1.39e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0384 - - gmx:100815312 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0384 5 8175951 8178223 Ssu5g0384 5 8175951 8178223 ECH
Ssu5g0384 5 8175951 8178223 Ssu1g3652 1 92138327 92139344 PCT