Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0371 ATGGAGGAATACACTAATAACAATCACCTTAGCGAAAACACGGGTCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCTTCGGCCAGTGGTGGAAACCATCATccgcatcatcatcatcatcacaaccatcaccaccaccatcatcagtTTCCCATCAACACCTTTCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAGGTGGCACCACACCCTGCTGTGAAAACCGAAGCCAGCACTTCTCAGCTTCACGCCCCGATTTTCCACTACCCTTTAATGAGAGGAAATCTTCACGGCACCACCACTATGCAACATCCCCAGCAAGGAGGGAGCCCAACAAGCTCCACTGGCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTACAAGCTTACATGGATTGCCAAAAGATAGGAGCTCCCCCAGAAGTGGTGGCGCGTATGGTTACGGCGAAGCAAGAGTTTGAGGCACGGCAACGATCTTCACTTGGCTCAAGGGAAACTTCAAAAGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCGATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTCTCTGATGATAAATGTGAAGGCGTTGGTTCATCAGAAGAGGATCAAGACAACAGTGGAGGAGAAACAGAACTTCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTTAAAAACCACTTGCTGCGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTCtcgaagaaaaaaaagaaagggaaactGCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGAccaaaagcaaataaataactGGTTCATAAACCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGCCTGCATCCGCAAAGTGCAACTCTCTATATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1158 0.4292 MEEYTNNNHLSENTGPSPSPRPNFLYSSASGGNHHPHHHHHHNHHHHHHQFPINTFHLQSGGSDHCFQSDQVAPHPAVKTEASTSQLHAPIFHYPLMRGNLHGTTTMQHPQQGGSPTSSTGEVEAIKAKIIAHPQYSNLLQAYMDCQKIGAPPEVVARMVTAKQEFEARQRSSLGSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0371 385 MobiDBLite consensus disorder prediction 1 30 - -
Ssu5g0371 385 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Ssu5g0371 385 CDD homeodomain 299 351 IPR001356 GO:0003677
Ssu5g0371 385 ProSitePatterns 'Homeobox' domain signature. 325 348 IPR017970 GO:0000981|GO:0006355
Ssu5g0371 385 Pfam KNOX2 domain 179 225 IPR005541 GO:0003677|GO:0005634
Ssu5g0371 385 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Ssu5g0371 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 377 - -
Ssu5g0371 385 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 377 - -
Ssu5g0371 385 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
Ssu5g0371 385 SUPERFAMILY Homeodomain-like 288 363 IPR009057 -
Ssu5g0371 385 MobiDBLite consensus disorder prediction 1 50 - -
Ssu5g0371 385 Pfam ELK domain 267 288 IPR005539 GO:0003677
Ssu5g0371 385 MobiDBLite consensus disorder prediction 33 50 - -
Ssu5g0371 385 SMART HOX_1 289 354 IPR001356 GO:0003677
Ssu5g0371 385 SMART ELK_2 267 288 IPR005539 GO:0003677
Ssu5g0371 385 Gene3D - 292 354 - -
Ssu5g0371 385 Pfam KNOX1 domain 125 167 IPR005540 GO:0003677|GO:0005634
Ssu5g0371 385 SMART KNOX1_2 124 168 IPR005540 GO:0003677|GO:0005634
Ssu5g0371 385 MobiDBLite consensus disorder prediction 236 264 - -
Ssu5g0371 385 SMART KNOX2_2 175 226 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0371 Ssu-Chr5 7854406 7859328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0371 63 385 Homeobox Transcription Factor Family AT4G08150 70.181 9.67e-156 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu5g0371 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0371 - - gmx:100807602 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0371 5 7854406 7859328 Ssu5g0371 5 7854406 7859328 ECH