Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0370 ATGAGTTTTCATGAGACGTCAAACACAGGGCTTGGACTTGGTCTTGGTCTTGGTCTTGTTAGCTTCCATAATCAATCGGAGAACATTGGCATGAAGAGTGATGAGCCCTCGAGAGAAAGCCATAAGAAAAAGGTGGAAAATCCATCAAAATGTAACAAGACATACCCTTCACTCACATTAGGACCACCGGATGATGATGAAGTGAATAATCAACCAAGTTCAAAGACCGAGTCCTATGAATATTTTCGTCCCCAAGTTTCTTCTCCCAGCGCAGtgtcttcattttccaactcctCTAGCATCAAGAGGGAGCGAGATCAGGTCTTGGGAGAAGAATTTGAGGTAGAGGTGGAGAAAGTTCCAACAAGGGTTGGTGATGTTGATGAAGAAGGCAATCCCAGAAAGAAACTTAGGCTCACCAAAGAACAATCCGCAATCTTGGAGGAAAACTTCAGAGAACATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAACGAAGCTGAATCTGCGAGCGAGACAAGTAGAGGTGTGGTTTCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACGGAGTCAGACTGTGAACTACTAAAGAAGTGTTGCGACACTCTaacagaagaaaataagaggCTGCAAAAGGAGCTGGAAGAACTAAAGTCAATGCAAACAACGTCAGTGCCCCTTTATATGCAGATTCCAGCAGCCACACTTTCCATATGCCCTTCGTGTGAGAGAATCTGCGGTGGCAACAGTGATAGCGGCAATGGCACTTCACACACGACAACGTTGCTTATTGGCTCAAAGACCCATCATCATCACTTTTACAAAAGTAACTATCCATTCCCCCACTCATCATCCGCAGCATGCTAG 876 0.4304 MSFHETSNTGLGLGLGLGLVSFHNQSENIGMKSDEPSRESHKKKVENPSKCNKTYPSLTLGPPDDDEVNNQPSSKTESYEYFRPQVSSPSAVSSFSNSSSIKRERDQVLGEEFEVEVEKVPTRVGDVDEEGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELATKLNLRARQVEVWFQNRRARTKLKQTESDCELLKKCCDTLTEENKRLQKELEELKSMQTTSVPLYMQIPAATLSICPSCERICGGNSDSGNGTSHTTTLLIGSKTHHHHFYKSNYPFPHSSSAAC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0370 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 289 - -
Ssu5g0370 291 SMART HOX_1 132 194 IPR001356 GO:0003677
Ssu5g0370 291 Gene3D - 126 196 - -
Ssu5g0370 291 Coils Coil 189 226 - -
Ssu5g0370 291 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Ssu5g0370 291 SUPERFAMILY Homeodomain-like 129 191 IPR009057 -
Ssu5g0370 291 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Ssu5g0370 291 MobiDBLite consensus disorder prediction 64 83 - -
Ssu5g0370 291 CDD homeodomain 133 191 IPR001356 GO:0003677
Ssu5g0370 291 MobiDBLite consensus disorder prediction 32 49 - -
Ssu5g0370 291 PANTHER - 1 289 - -
Ssu5g0370 291 MobiDBLite consensus disorder prediction 28 83 - -
Ssu5g0370 291 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Ssu5g0370 291 Pfam Homeobox associated leucine zipper 190 223 IPR003106 GO:0006355|GO:0043565
Ssu5g0370 291 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0370 Ssu-Chr5 7835712 7837891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0370 1 248 Homeobox Transcription Factor Family AT2G22800 54.183 1.08e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g0370 Homeodomain 5.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0370 K09338 - gmx:100807072 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0370 5 7835712 7837891 Ssu5g0370 5 7835712 7837891 ECH