Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0361 ATGACTCTACCCATCTCGGACCGCCAGTGCCGGCGAAGCCCCAAAACCCATCACCGAAATCCCATTTCCTTGAAACACAACGCCGGCGAAGGTGGCTTCGATGGCTCATCGTTCTCTGGCGCGGTGTTCAACCTCTCAACCACCATCGTCGGCGCTGGTATCATGGCTCTTCCGGCCGCTGTCAGGCAACTGGGGCTAATTCCAGGTTTAGTCATGATCATTCTGTGTGCCATGTTAACGGAATCGTCCGTTGCCATGCTCGTGCGGTTCACACGTGCGTCCAAGTCCTCCACATATTCCGGGGTTGTCCGCGACGCGTTTGGTAGCCTTGGTCGGAACCTCTTGTTGCTTTGCATCATCGTAAACAACGTGGGCATGCTCGTCGTGTACATGGTCATTATCGGTGATGTGTTCTCAGGATCATGGTCCGAAGGAGTGCACTATTCAGGGGTTGTGGAAGAATGGTTTGGTCAACGTTGGTGGTCAACGCGTCCTGTTTTACTGTTGCTCACAACGCTTCTGGTCTTGGTGCCTCTCGCATCATTCAGGCGTGTGGATTCGCTGAGATACACCTCAGCATTGTCAGTGGGGTTGGCTATTGTATTTGTGGTGATAACAGCAGGCATAGCAATTGTTAAGTTTGTCGATCGAAGCATTGGGATGCCACGGTTAATGCCAAAATTCACTGGCCTGGAGTCCTTTTGGAAGCTTTTCACAAGTATCCCTATATTAGTCTCTGCTTTCATCTGTCATCATAATGTTCACCCTATAGAGAATGAGCTTAAAGATCCTTCCCAAATGAAGGCAATAGTCCGGACATCACTCTTACTATGCTCGTCTGTGTACATAATGACCAGcctttttggttttttcttaTTTGGGGACAAAACATTGGATGATGTACTTGCCAACTTTGATGGGGATCTTGGAGTTCCTCATGGCTCATTTCTTACTGATATTGTTAGAGTGAGCTATGGCATTCACCTTATCCTTGTTTTCCCAATTGTGTTTTACTCCCTTCGCCTCAACCTAGATGGTCTTTTGTTTCCACATGTCATTCCTCTTGCCTTTGACACCCGGAGATTCTTTTTGGTGACCACAGTTctcatgtttttcatttttgttggaGCCAATTTTGTTCCCAGCATCTGGGATGCCTTCCAATTCATAGGCGCCACAGCTGCTGTATCTGCTGGATACATTTTTCCAGCTGCTATTGCTCTTAGGGATACTCGTGGGGTTGCAACAAAGAAAGACAAGTTGTTATCTTGGTTGATGATACTTTTGGCTGTCTCATGTAGCACTGTGGCCATCTTTAGTGACTTGTATAGTGTCTACAGTAATGAATCAAACGTAGctgaaaaattgttttga 1374 0.4563 MTLPISDRQCRRSPKTHHRNPISLKHNAGEGGFDGSSFSGAVFNLSTTIVGAGIMALPAAVRQLGLIPGLVMIILCAMLTESSVAMLVRFTRASKSSTYSGVVRDAFGSLGRNLLLLCIIVNNVGMLVVYMVIIGDVFSGSWSEGVHYSGVVEEWFGQRWWSTRPVLLLLTTLLVLVPLASFRRVDSLRYTSALSVGLAIVFVVITAGIAIVKFVDRSIGMPRLMPKFTGLESFWKLFTSIPILVSAFICHHNVHPIENELKDPSQMKAIVRTSLLLCSSVYIMTSLFGFFLFGDKTLDDVLANFDGDLGVPHGSFLTDIVRVSYGIHLILVFPIVFYSLRLNLDGLLFPHVIPLAFDTRRFFLVTTVLMFFIFVGANFVPSIWDAFQFIGATAAVSAGYIFPAAIALRDTRGVATKKDKLLSWLMILLAVSCSTVAIFSDLYSVYSNESNVAEKLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0361 457 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g0361 457 PANTHER AMINO ACID TRANSPORTER AVT6A 21 449 - -
Ssu5g0361 457 Pfam Transmembrane amino acid transporter protein 35 440 IPR013057 -
Ssu5g0361 457 PANTHER AMINO ACID TRANSPORTER 21 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0361 Ssu-Chr5 7645235 7648884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0361 33 450 Amino Acid or Auxin Permease AAAP Family AT3G30390 58.373 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0361 K14207 - gmx:100814034 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0361 5 7645235 7648884 Ssu5g0361 5 7645235 7648884 ECH