Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0343 ATGCCTTTGTATCAGCCACCtaaggagagaaaagaagaggatGTGAAGATTGAAGCTGGTGTGGATCTGAAGGTGATGATTAAGGAGCTGGATTCAATTGATGTGCCTTCTGTGTTCATCTGCCCAATCTCCCTTGCACCAATGCAAGACCCTGTGACCCTTTGCACGGGTCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTCGGTCACAAAACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATGTTGTCACTCCCAACAAGACCCTCAGCCACTTGATCCTCACTTGGTTCTCTCACAAGTACTTGGCCATGAAGAAGAGGCTCGAGGACGTGCAAGGAAGAGCCCTAGACCTCTTGGACACGCTCAAGAAGGTAAAGGGTCAAGCCAGAGTTCGAGCACTTCAGGATCTAAGGCAACTTGTAGCTTCTCATGTGAATGCAAGAAAGACAGTTGAGGAAAATGGTGGGGTTGCTTTGGTTTTTAACTTGTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCTGAAGCAGTTGGGATCATTGTGAGTTTGGATTTGAGTTCTGAGTTGAAGGGAAGTCTCATGCATCCGGCTAAGGTGTCATTGTTGGTGGATATCATGAATGAGGGAACCATCGAGACAAAAATGAACTGTGCCAAGTTGATTGAGATGTTGTTGATGGAAGGGAATGGGACTCCGTCTCGGTCTCAGACTGAGATtgtctcaagtttgagtctttTGGTTGGGTTATTGAGGCTAGTGAGGGATAAGAAACACCCAACTGGGGTCTCAACTGGTCTCATATTACTCAAGGCTATAATATGTTCCCATGAATCAGTTAGAAGCTCAGTGATAAGCCTAGGAGCAATTCCTCTATTGATTGAACTTTTGCCTAGTTTGAATAATGAGTGCTTGGAGATAGCACTATACATTCTAGAGGTGTTGTCAAAACTTCCAGAGGGAAGAATGGCTTTGAAAGAATGTCCAAATATTATTCCTAATGTGGTCAAGTTGCTGATGAGAGTCTCAGAGAGGTGCACTCAATTTGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCCTCACAGGCTGTGGAGGCTGGGTTGGCAGCAAAGCTTCTGTTGGTGATTCAGAGTGGCTGCAACCCTGTGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGTCTGAATTTCTCTACGGGCATCTTGGTTTCCAAGTGTATGCTGACCACAACGATACAATGA 1278 0.4405 MPLYQPPKERKEEDVKIEAGVDLKVMIKELDSIDVPSVFICPISLAPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDVVTPNKTLSHLILTWFSHKYLAMKKRLEDVQGRALDLLDTLKKVKGQARVRALQDLRQLVASHVNARKTVEENGGVALVFNLLGPFTSHAVGSEAVGIIVSLDLSSELKGSLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNGTPSRSQTEIVSSLSLLVGLLRLVRDKKHPTGVSTGLILLKAIICSHESVRSSVISLGAIPLLIELLPSLNNECLEIALYILEVLSKLPEGRMALKECPNIIPNVVKLLMRVSERCTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNFSTGILVSKCMLTTTIQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0343 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 424 - -
Ssu5g0343 425 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Ssu5g0343 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 116 IPR013083 -
Ssu5g0343 425 CDD RING-Ubox_PUB 39 81 IPR045210 -
Ssu5g0343 425 Gene3D - 117 238 IPR011989 -
Ssu5g0343 425 Gene3D - 239 404 IPR011989 -
Ssu5g0343 425 Pfam U-box domain 35 105 IPR003613 GO:0004842|GO:0016567
Ssu5g0343 425 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Ssu5g0343 425 PANTHER WDSAM1 PROTEIN 17 424 IPR045185 GO:0061630
Ssu5g0343 425 SUPERFAMILY ARM repeat 123 405 IPR016024 -
Ssu5g0343 425 Coils Coil 139 159 - -
Ssu5g0343 425 SUPERFAMILY RING/U-box 30 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0343 Ssu-Chr5 7142937 7144214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0343 21 425 U-box Gene Family AT3G49810 64.938 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0343 - - gmx:100803878 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0343 5 7142937 7144214 Ssu5g0343 5 7142937 7144214 ECH