LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0333	ATGGCACCCAAAAACCCCGAAGACCCGACACTTGCCAAACTTGAGTCAGCATGTTCCGACTTGAAAACCCTCCTTCGAGCCTCAGAGGAAACGGAAGAGAATCTGGGAGAGACGGAGACGAGGTTCGATCTCTTACAAGGATCACTGTCGAAAGCATCCAGAAGAATGGTTCCTTTACAATCCTTAGCCATGTCGAGGAAGGCACTTGACACCAGAATCACCAGAGCAATTTCCCCCGCGCTCGCACTCCTCAACACGTTCAAACGCACGGAGTCTCTCCAAAACAACCTCGTCGACATCTCGTCGAAGCTGTCAGCGAAGAAGCCGCATCAGAAGCGGCTTGAGAAGCTTCGGGAATACGTGGAGTGCGTGGGCGAGCTGAACGAGGGGATTAACAGCATAGGCGAAGAGGTTGAGGTGGTGATTCAGAAGCTGCAGGAGGTGGTGGAGTTTATAAGCCGAACGAAGGCGGCGGATCGGTACAGGAACGAGAGGCTGAGGGAGGCGCTGGCGACTCTGAAGGCGCTGTATGAGAGCGAGGTTGATGAGATGAGGTTCGAGGGGTTGCTGGACCGGGCTTTGGTTCATATGCAGGATGAGTTTGAGGGTCTGTTGCTGAGAATGAAGCACCGGAACCTGGGAGATTTGTTGCACCAACATGCTGACAGGGAATTGGGGTCGGACCTGGAAATTGAAGTCCTCACACGAATTTCAACCACTCTTGCCGCCAATGATTGCCTAGACATATGCATTGACATATACGTCAAGACGAGATACAGAAGGGCTGCGAAGGCACTAATGAAGCTAAACCCTGATTACCTGCGAACATACACCCCAGAAGGAATCGACGAAATGGAGTGGGAAACCCTAGAGACAGCCATAACCCTCTGGGTCCAACACTTGGAAGTCGCAGTAAAGAAGGTCCTCCTCTCAGAAAAAAAACTCTGCGAAAGAGTCTTGGGAGATTTCATGGAGGGACTAGTATGGCCAGAATGCTTCATCAAAATCTCCGACAAGATCATGGCCGTCTTCTTCCGCTTCGGCGAAGGCGTGGCCCGAAGCAGCAAAGAGCCTCAGAAGCTGTTCAAACTCTTAGACATGTTCGAATCCTTAGTAAAACTCAAACCGGAGATGTCACAAATCTTTGAAGGCGAACCCGGGGTAGACATATGCACCCGGTTCCGCGAGTTAGAGAAACTCATCATCGATGCTTCGAGCAAAGTCTTCTGGGAATTCGGCCTCCAAATAGAAGGCAACATCGACGGCCTTCCACCTCCTCAAGACGGTTCCGTTCCCAAACTCGTAAGATACGCTATCAACTATCTCAAGTACCTCACCACAGTTAATTACCGAGCATCCATGGTTAAGGTTCTCCAAACCGAACAAACATGGAAAGGTAGCAATGACGTGTCCTCCAAACACGAAACGGACGAGGGTTTATTGAAGCATGCAATTTCCAACGTCATGGAGGCGCTTCAGAGAAACATTGAGTCAAAACGTTTGTGTTGTAGGGACAAGGTTTTGGTGCACGTGTTCACGATGAACACTTATTGGTACATTTACATGAGGACAAAGAACACGGAGCTTGGTGAGGTGTTGGGTGAGCAATACATGAAGAAAGGTTATAAGGCCGTGGCGGAGGAATCTGCTTACTTGTATCAGAAGCAAGCGTGGGGGGGTTTGGTGAGGGTTTTGGATGGTGAGGATGTGAGGGAGGAAGGGAAGGGGAGTGTTGGAAGGGTGGTGAGTGAGAAGATTGAGACGTTTTTCAAGGGTTTGAATGAGGTTTGTGAGAGGCACAGAGGGGTGTACAGTATACCGGACGTTGATTTGAGGGAGCAAATGAGGGAAGCGACGGTGAGGCTTGTGGTGCCGGCTTATGCGGAGTTTTTGGAGGCTTATTCGGGGTTGATGCAGAGGAAAGGGTTTCCGAGTGTTGAGAGGGTGAAGGGATTGGTGGGGAAGGCTTTTGATGGGAAGGTGATGAAGAGATGGGGATCTGCTTCTAGTGATTGGAATGCTGCAAGGAACTCTGCGTCTCTGGAGGGGGATGTTAGATCAGGCAATGGTGGCGATGTTTGA	2082	0.5038	MAPKNPEDPTLAKLESACSDLKTLLRASEETEENLGETETRFDLLQGSLSKASRRMVPLQSLAMSRKALDTRITRAISPALALLNTFKRTESLQNNLVDISSKLSAKKPHQKRLEKLREYVECVGELNEGINSIGEEVEVVIQKLQEVVEFISRTKAADRYRNERLREALATLKALYESEVDEMRFEGLLDRALVHMQDEFEGLLLRMKHRNLGDLLHQHADRELGSDLEIEVLTRISTTLAANDCLDICIDIYVKTRYRRAAKALMKLNPDYLRTYTPEGIDEMEWETLETAITLWVQHLEVAVKKVLLSEKKLCERVLGDFMEGLVWPECFIKISDKIMAVFFRFGEGVARSSKEPQKLFKLLDMFESLVKLKPEMSQIFEGEPGVDICTRFRELEKLIIDASSKVFWEFGLQIEGNIDGLPPPQDGSVPKLVRYAINYLKYLTTVNYRASMVKVLQTEQTWKGSNDVSSKHETDEGLLKHAISNVMEALQRNIESKRLCCRDKVLVHVFTMNTYWYIYMRTKNTELGEVLGEQYMKKGYKAVAEESAYLYQKQAWGGLVRVLDGEDVREEGKGSVGRVVSEKIETFFKGLNEVCERHRGVYSIPDVDLREQMREATVRLVVPAYAEFLEAYSGLMQRKGFPSVERVKGLVGKAFDGKVMKRWGSASSDWNAARNSASLEGDVRSGNGGDV	693

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0333	693	Coils	Coil	11	41	-	-
	Ssu5g0333	693	Gene3D	Exocyst complex component Exo70	142	664	-	-
	Ssu5g0333	693	SUPERFAMILY	Cullin repeat-like	164	639	IPR016159	-
	Ssu5g0333	693	PANTHER	OS08G0519900 PROTEIN	8	659	-	-
	Ssu5g0333	693	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	8	659	IPR004140	GO:0000145\|GO:0006887
	Ssu5g0333	693	Coils	Coil	163	183	-	-
	Ssu5g0333	693	Pfam	Exo70 exocyst complex subunit	297	638	IPR046364	GO:0000145\|GO:0005546\|GO:0006887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0333	Ssu-Chr5	6991080	6994199	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0333	1	640	EXO70 exocyst subunit family	AT4G31540	29.003	1.93e-77	260

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0333	-		-	gmx:100778774	1148.65

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g0333	5	6991080	6994199	Ssu5g0333	5	6991080	6994199	ECH

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