Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0326 ATGTTGTGCGCTTGTTCCGGGGagcaattcaaatttgaagAGGCGCCACAGTCACCTGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGCCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAAACACAAGTGGAAGATGTTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGCTGCTGCCCTTCAAGTGTTTGAGGGTATAGACATAACGGCTTTGGCCCCAAGGATGATCAGGGCTATAGCTGAAAGAACCAAGCAAAGAAAACCACGGTCCAAGGTGGATAATGTGCTTCCTAATGTGATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGGCGATACACTGAGGCTGCAAAGGAGTGCAGAATTATTGTGGATACAGTTGAATCTGCTCTTCCTAATGGAATGCCAGAGGGTATTGGTGAAGACTGTAAGTTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCATATCTATGGATCAAGGCAGGTTTTCTAGATGAAGCTGTCACTGCTTATCGGCGGGCTCTAGTCAAGCCCTGGAATTTGGAGCCGCGGAGGTTGGCCTGTGTACAAAAAGATTTAGCTACCACACTACTCTATAGTGGTGTTGAAGTAAACCTACCTTCTCAGTTGCAAGTGAAGGGTCTAACTACACCTATGAGTGGCACTGAAGAAGCAATACTTTTGCTATTAATACTCTCAGGAAAGATGGCACTTCAGGAAATAGACTGGGACCCTGAAATAATGGATCATCTTacattttcactttcaattacTGGGATGTTTAAATCATTGGCAGATAATGTAGAGAAGGTCCTTCCAGGTGTTTATGATCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAGTGCAGCAGGACACAATGAAGTAGCCTTAAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACctcattttccttcatttttgttTGGCACAAAGCTGTGTTCTCTACATCCAAACCATGCTCGTGAAGGCATTAAATTTTCACAGGAGGTTATTGATCTAGCCAGGCATCAAAATGAGCATTTTTTGGGTCAAGGCCAAAAATTTCTTGGCATTTGCCATGGGGCTGCTGCTAGAATATCTGTACTGGATTCTGAGAGAATTATATTTCAAAGAGAGTCTTTGAACTTTCTACATGATGCTGCTGCTCTAACTGTAAATAATGACCCAGAAGTGATATTCAGCCTTGGATTGGAAAATGCAATTCAAAGAAATCTAATGCAGCTTATGACAATATAA 1392 0.4124 MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSRTGDWESKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFAAALQVFEGIDITALAPRMIRAIAERTKQRKPRSKVDNVLPNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIIVDTVESALPNGMPEGIGEDCKLQEMFHKALELLPYLWIKAGFLDEAVTAYRRALVKPWNLEPRRLACVQKDLATTLLYSGVEVNLPSQLQVKGLTTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSITGMFKSLADNVEKVLPGVYDRAERWYFLALCYSAAGHNEVALNLLRKACGSSEAKHRPHFPSFLFGTKLCSLHPNHAREGIKFSQEVIDLARHQNEHFLGQGQKFLGICHGAAARISVLDSERIIFQRESLNFLHDAAALTVNNDPEVIFSLGLENAIQRNLMQLMTI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0326 463 MobiDBLite consensus disorder prediction 15 38 - -
Ssu5g0326 463 PANTHER PROTEIN NPGR1 1 458 - -
Ssu5g0326 463 SUPERFAMILY TPR-like 65 346 IPR011990 GO:0005515
Ssu5g0326 463 Gene3D Tetratricopeptide repeat domain 28 393 IPR011990 GO:0005515
Ssu5g0326 463 Coils Coil 56 76 - -
Ssu5g0326 463 MobiDBLite consensus disorder prediction 21 37 - -
Ssu5g0326 463 PANTHER PROTEIN NPG1 1 458 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0326 Ssu-Chr5 6936987 6938762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0326 1 457 Calmodulin-binding Proteins AT1G27460 61.388 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0326 K21843 - gmx:100795958 825.083