Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0314 ATGAGCTGCAACGGTTGCCGAGTGCTCCGGAAGGGTTGCAGCGAGACATGCCCTCTGAGGTCGTGCCTGCAGTGGATCGAATCCCCTGAATCGCAACGACACGCCACTCTCTTCCTCGCTAAGTTCTTTGGCCGTAGCGACCTAATGTCCTTCATTTCTTCCGTCCCCGAAACCAAAAGACCTGCGTTGTTTCAGTCTCTACTATTTGAAGGGTGCGGGCGAACGGTAAATCCGGTGAACGGTGCCGTGGGACTTCTGTGGAGCGGTAACTGGCACGTGTGCCAGGCCGCCGTGGAGACGGTGCTCGCCGGAGGTGTTCTTCGTCCGTTGCCGGAGACATTGGCCGGAGTTTCCAATGACACGCGCTATCATTTCCGGCCATTAGCGTTCATGCATGATGTGAGAGAGATGAATGAGGAGTCAAGTTTGATGAAGAGACCACCGGAATTGGAGATGACAAGTTACGATGGCCACGAGGATAAACAGATTTTAAATCTGTTCCTGTAA 507 0.5365 MSCNGCRVLRKGCSETCPLRSCLQWIESPESQRHATLFLAKFFGRSDLMSFISSVPETKRPALFQSLLFEGCGRTVNPVNGAVGLLWSGNWHVCQAAVETVLAGGVLRPLPETLAGVSNDTRYHFRPLAFMHDVREMNEESSLMKRPPELEMTSYDGHEDKQILNLFL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0314 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 119 - -
Ssu5g0314 168 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Ssu5g0314 168 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Ssu5g0314 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0314 Ssu-Chr5 6630811 6631824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0314 1 116 AS2 family AT3G49940 79.310 3.58e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu5g0314 LOB 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0314 - - gmx:100796966 302.753