Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0282 ATGGCTGTGGAGCTTATAAGGAATAGTGTGAGCGATGATGGCAACGCAATTGCGGTGCGGGAAGCGGCTTCTGCGGGCATTCACAGCGTGGAGAAACTCGTGAAGATGATTTCGGAACAGAGGAATCAGCAGAAGGGTAACGAGGGTGGTTCCGAATTGGAAGTTGTTGCTGACGTGGCGGTGAACCGGTTCAGAGAGGTTATTTCGCTGCTTGACAGACCGAGAGCCGGTCACGCTCGTTTCAGAAGGGCCCCTACAACAGCGCCACCTGTCCCTATTATTCAGTTGCAGCAGCAAATGGTGGTGGGTGATTCGAAACACAAACAAAACGAGacagaacaaaaacaaaaacaaactacCTCTGCTTTCAAGGTTTATTGCCCCCCTCCTCCTCTGCCTCAAAATCACCGCCACCAACAACCTTTTATTCTTCCTCTGCCTGAGAAGAATGAGGCAAATGCTTCTACCAACTCCTATGTTTCTACGTTAACGGGGGACACAGAAAGTTTGCAACGGTCCGGTCGCTCTTCAGGGTTTCAAATTTCTCGCGTGTCACTGCGGGGGgattcttttatgcgtaaaccGCCACTGTCTTCGAATCCTGTGAAGAGGAAGTGCAATTCAACGGGCTTTCTTGATATCAAGTGTGGATCGTCCTCGACGCAGTGTCATTGCTCCAAGAAAAGGAAATTGAGGTTGAGGAGAGTGATTAGAGTACCAGCTGTTAGTTCCAAGGCTGCTGATATCCCACCCGATGAATATTCGTGGAGGAAATATGGACAGAAACCAATCAAAGGCTCTCCACACCCGAGAGGTTATTACAAGTGCACCAGCGTGAGAGGCTGCCCAGCACGCAAACATGTGGAGCGTGCTGTGGACGATTCCAACATGCTCGTTGTCACCTACGAGGGAGATCATAATCACTCGCACACCGCTTCTGAGGTGGCAAATGTTGTCCTTGAATCATCTTAG 972 0.4815 MAVELIRNSVSDDGNAIAVREAASAGIHSVEKLVKMISEQRNQQKGNEGGSELEVVADVAVNRFREVISLLDRPRAGHARFRRAPTTAPPVPIIQLQQQMVVGDSKHKQNETEQKQKQTTSAFKVYCPPPPLPQNHRHQQPFILPLPEKNEANASTNSYVSTLTGDTESLQRSGRSSGFQISRVSLRGDSFMRKPPLSSNPVKRKCNSTGFLDIKCGSSSTQCHCSKKRKLRLRRVIRVPAVSSKAADIPPDEYSWRKYGQKPIKGSPHPRGYYKCTSVRGCPARKHVERAVDDSNMLVVTYEGDHNHSHTASEVANVVLESS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0282 323 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0282 323 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0282 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 323 IPR044810 GO:0003700
Ssu5g0282 323 SUPERFAMILY WRKY DNA-binding domain 247 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0282 323 Pfam Plant zinc cluster domain 203 248 IPR018872 -
Ssu5g0282 323 Gene3D WRKY domain 237 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0282 323 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 15 323 - -
Ssu5g0282 323 Pfam WRKY DNA -binding domain 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0282 Ssu-Chr5 5915170 5916786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0282 18 271 WRKY Transcription Factor Family AT4G24240 45.614 2.34e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g0282 WRKY 7.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0282 - - gmx:100786245 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0282 5 5915170 5916786 Ssu5g0282 5 5915170 5916786 ECH