Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0273 ATGTATGCTGCATTGGATCTAATAAAAGTATGGCTTCCTAGTGGTGGTGGAAAGGAGGgagaggagaaattattaagtagttcaGAACTATCAATCATTGAAATTGGTTCACAACCACAATCACAAGGAACCAGTCATAGTGCTTCTCAAGTGGATTCACACCAAGCTATTATTACTGATACGGGTAATGCTATTGTCACGCAACATGAGGGTGATGCCCTTCCGGAAAATGAGCATCTGGAATTTCCAGTCACTCGAATCTGTTCACATTCACAACAAGGCAATAGTGATAGTGATAACAGCATCATGGCACGGTTCATGGGTTGTATAGAGGCGCTTAAGAAGGAGAATACGAGCCTTATCGACACAATTTCTAAACACGTTGGCGAATACCTCAAGATTAATGTTGTCGACGAGGACCAGATTCCAGTGCAGGAAATACATGCCGATGATAACTTGGTGGTGGATGCGTTGCCATCAGGAATTATCAACGACCTTCGTGAAGCCGTGAGGCTGATGGTGACAGCAGGGTTTGAGGTGGAATGCTGCAAAGCGTACCGAAGTTGCCGTAGGAAATTCCTGAGAAGGAGTGTATCGACACTTTGGTTGCAAATGCAAGAGCTCAACGTGGGGGACAATATTGACAAGATAATGGAGATTCAGTGTTGGATAAAAGTTTTGAACGTAGCTGCGAGGATAGTCTTTCCCAACGAAAGGAGACTCTGCGATCGCATCTTTGAGGGTCCATTTCCACTGCGAACAAGTTCCGTGTTTCACTTGGAAATGATGCGCGCAGGGTTGAGAAGAGTTTGA 813 0.4367 MYAALDLIKVWLPSGGGKEGEEKLLSSSELSIIEIGSQPQSQGTSHSASQVDSHQAIITDTGNAIVTQHEGDALPENEHLEFPVTRICSHSQQGNSDSDNSIMARFMGCIEALKKENTSLIDTISKHVGEYLKINVVDEDQIPVQEIHADDNLVVDALPSGIINDLREAVRLMVTAGFEVECCKAYRSCRRKFLRRSVSTLWLQMQELNVGDNIDKIMEIQCWIKVLNVAARIVFPNERRLCDRIFEGPFPLRTSSVFHLEMMRAGLRRV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0273 270 PANTHER PROTEIN, PUTATIVE-RELATED 101 265 - -
Ssu5g0273 270 Gene3D Exocyst complex component Exo70 82 266 - -
Ssu5g0273 270 SUPERFAMILY Cullin repeat-like 138 248 IPR016159 -
Ssu5g0273 270 PANTHER EXOCYST COMPLEX PROTEIN EXO70 101 265 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0273 Ssu-Chr5 5714266 5716654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0273 134 248 EXO70 exocyst subunit family AT5G58430 47.619 3.92e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0273 - - gmx:100788390 258.07